Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX73800 | Canola | nucleus | 55.22 | 31.09 |
CDY35101 | Canola | nucleus | 82.09 | 26.44 |
CDY55883 | Canola | nucleus | 82.09 | 26.32 |
CDX79305 | Canola | nucleus | 80.6 | 21.86 |
CDX68004 | Canola | nucleus | 80.6 | 20.22 |
CDX81764 | Canola | nucleus | 83.58 | 20.07 |
CDX88513 | Canola | nucleus | 80.6 | 20.0 |
CDY51002 | Canola | nucleus | 82.09 | 19.71 |
CDX87403 | Canola | nucleus | 79.1 | 19.63 |
CDY15424 | Canola | nucleus | 56.72 | 17.19 |
CDY35519 | Canola | nucleus | 59.7 | 15.94 |
CDX84795 | Canola | nucleus | 58.21 | 15.85 |
CDY23952 | Canola | nucleus | 58.21 | 15.85 |
CDY24243 | Canola | nucleus | 55.22 | 15.68 |
CDX92979 | Canola | nucleus | 62.69 | 15.5 |
CDY10506 | Canola | nucleus | 68.66 | 15.38 |
CDY42408 | Canola | nucleus | 68.66 | 15.38 |
CDY57089 | Canola | nucleus | 56.72 | 15.2 |
CDY43399 | Canola | nucleus | 53.73 | 15.19 |
CDY08989 | Canola | nucleus | 59.7 | 15.15 |
CDY70982 | Canola | nucleus | 56.72 | 15.02 |
CDY10182 | Canola | nucleus | 55.22 | 14.8 |
CDX77536 | Canola | nucleus | 62.69 | 14.74 |
CDY47723 | Canola | nucleus | 55.22 | 14.68 |
CDX85074 | Canola | nucleus | 61.19 | 14.39 |
CDY00800 | Canola | nucleus | 43.28 | 13.3 |
CDY35097 | Canola | nucleus | 19.4 | 9.42 |
CDY15425 | Canola | nucleus | 1.49 | 0.93 |
CDX73801 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:CDX69310 | EnsemblPlantsGene:GSBRNA2T00131141001 | Gene3D:1.10.10.60 | GO:A0A078BWX8 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
PANTHER:PTHR10641 | PANTHER:PTHR10641:SF462 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX69310 | ProteinID:CDX69310.1 |
SUPFAM:SSF46689 | UniParc:UPI0004EB4636 | MapMan:35.1 | : | : | : |
Description
BnaC01g01430D
Coordinates
chrLK031789:+:4067859..4068159
Molecular Weight (calculated)
7602.4 Da
IEP (calculated)
9.778
GRAVY (calculated)
-0.469
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKGRAPCCD KTKVKRGPWS YDEDLKLISF IQKYGHKNWR SLPNQAGLLR CGMSCRLLDG LITSDLM
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.