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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73800 Canola nucleus 55.22 31.09
CDY35101 Canola nucleus 82.09 26.44
CDY55883 Canola nucleus 82.09 26.32
CDX79305 Canola nucleus 80.6 21.86
CDX68004 Canola nucleus 80.6 20.22
CDX81764 Canola nucleus 83.58 20.07
CDX88513 Canola nucleus 80.6 20.0
CDY51002 Canola nucleus 82.09 19.71
CDX87403 Canola nucleus 79.1 19.63
CDY15424 Canola nucleus 56.72 17.19
CDY35519 Canola nucleus 59.7 15.94
CDX84795 Canola nucleus 58.21 15.85
CDY23952 Canola nucleus 58.21 15.85
CDY24243 Canola nucleus 55.22 15.68
CDX92979 Canola nucleus 62.69 15.5
CDY10506 Canola nucleus 68.66 15.38
CDY42408 Canola nucleus 68.66 15.38
CDY57089 Canola nucleus 56.72 15.2
CDY43399 Canola nucleus 53.73 15.19
CDY08989 Canola nucleus 59.7 15.15
CDY70982 Canola nucleus 56.72 15.02
CDY10182 Canola nucleus 55.22 14.8
CDX77536 Canola nucleus 62.69 14.74
CDY47723 Canola nucleus 55.22 14.68
CDX85074 Canola nucleus 61.19 14.39
CDY00800 Canola nucleus 43.28 13.3
CDY35097 Canola nucleus 19.4 9.42
CDY15425 Canola nucleus 1.49 0.93
CDX73801 Canola nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:CDX69310EnsemblPlantsGene:GSBRNA2T00131141001Gene3D:1.10.10.60GO:A0A078BWX8GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/Myb
PANTHER:PTHR10641PANTHER:PTHR10641:SF462PFAM:PF00249PFscan:PS51294ProteinID:CDX69310ProteinID:CDX69310.1
SUPFAM:SSF46689UniParc:UPI0004EB4636MapMan:35.1:::
Description
BnaC01g01430D
Coordinates
chrLK031789:+:4067859..4068159
Molecular Weight (calculated)
7602.4 Da
IEP (calculated)
9.778
GRAVY (calculated)
-0.469
Length
67 amino acids
Sequence
(BLAST)
1: MGKGRAPCCD KTKVKRGPWS YDEDLKLISF IQKYGHKNWR SLPNQAGLLR CGMSCRLLDG LITSDLM
Best Arabidopsis Sequence Match ( AT1G16490.1 )
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.