Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43399 | Canola | nucleus | 96.61 | 96.2 |
| CDY00800 | Canola | nucleus | 75.42 | 81.65 |
| CDX73800 | Canola | nucleus | 38.56 | 76.47 |
| CDX73801 | Canola | nucleus | 21.61 | 76.12 |
| AT3G12820.1 | Thale cress | nucleus | 75.42 | 74.48 |
| CDX69310 | Canola | nucleus | 15.68 | 55.22 |
| PGSC0003DMT400089342 | Potato | nucleus | 49.58 | 48.55 |
| PGSC0003DMT400029235 | Potato | nucleus | 42.37 | 41.84 |
| Solyc10g005550.1.1 | Tomato | nucleus | 41.95 | 40.74 |
| CDX79305 | Canola | nucleus | 41.1 | 39.27 |
| CDY35097 | Canola | nucleus | 22.88 | 39.13 |
| CDY10506 | Canola | nucleus | 49.58 | 39.13 |
| CDY42408 | Canola | nucleus | 48.73 | 38.46 |
| CDY35101 | Canola | nucleus | 33.9 | 38.46 |
| CDY55883 | Canola | nucleus | 33.9 | 38.28 |
| CDX88513 | Canola | nucleus | 42.8 | 37.41 |
| CDX87403 | Canola | nucleus | 42.37 | 37.04 |
| CDY15424 | Canola | nucleus | 34.32 | 36.65 |
| CDX81764 | Canola | nucleus | 43.22 | 36.56 |
| CDY51002 | Canola | nucleus | 42.37 | 35.84 |
| CDX68004 | Canola | nucleus | 40.25 | 35.58 |
| CDY10182 | Canola | nucleus | 37.29 | 35.2 |
| CDY35519 | Canola | nucleus | 37.29 | 35.06 |
| CDY47723 | Canola | nucleus | 37.29 | 34.92 |
| CDX92979 | Canola | nucleus | 38.98 | 33.95 |
| CDY57089 | Canola | nucleus | 34.32 | 32.4 |
| CDX84795 | Canola | nucleus | 33.47 | 32.11 |
| CDY23952 | Canola | nucleus | 33.47 | 32.11 |
| CDY70982 | Canola | nucleus | 34.32 | 32.02 |
| CDX77536 | Canola | nucleus | 38.56 | 31.93 |
| CDY08989 | Canola | nucleus | 35.59 | 31.82 |
| CDX85074 | Canola | nucleus | 38.14 | 31.58 |
| KRH13720 | Soybean | nucleus | 44.49 | 30.43 |
| KRH43737 | Soybean | nucleus | 47.88 | 29.27 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 42.8 | 27.75 |
| CDY15425 | Canola | nucleus | 1.27 | 2.8 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078GHY6 | UniProt:A0A078GHY6 | EnsemblPlants:CDY24243 | ProteinID:CDY24243 |
| ProteinID:CDY24243.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00026379001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF883 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDB0B3 | SEG:seg |
Description
BnaC01g38230DBnaC01g38230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHY6]
Coordinates
chrLK032155:+:591606..593140
Molecular Weight (calculated)
26883.7 Da
IEP (calculated)
8.222
GRAVY (calculated)
-0.804
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGKAPCCD HSQILKRGPW SDEESEILKA FILKNGHRNW RSIPKLAGLM RCGKSCRLRW VNYLRPGLKR GNFTKEEEDT IIHLHQTLGN KWAKIASHLG
101: RTDNEIKNVW NTHLKKRLIK RNSSASSDVT NQAPSVSRSS SSSSSSVSNN VIKSEKLNQE EELEQILVED MASGFEVNAP QSLESLFEDR KVPPPITKPD
201: SLEIRGKSDD ELCRQMVEPG LDDYNEWLNY FDNQTF
101: RTDNEIKNVW NTHLKKRLIK RNSSASSDVT NQAPSVSRSS SSSSSSVSNN VIKSEKLNQE EELEQILVED MASGFEVNAP QSLESLFEDR KVPPPITKPD
201: SLEIRGKSDD ELCRQMVEPG LDDYNEWLNY FDNQTF
001: MGNRRAPCCD KSQVKRGPWS DEESERLRSF ILKNGHQNWR SLPKLAGLMR CGKSCRLRWI NYLRPGLKRG NFTKEEEDTI IHLHQAYGNK WSKIASNFPG
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
Arabidopsis Description
AtMYB10Transcription factor MYB10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.