Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73800 | Canola | nucleus | 38.08 | 76.47 |
| CDY00800 | Canola | nucleus | 69.04 | 75.69 |
| CDY24243 | Canola | nucleus | 74.48 | 75.42 |
| Bra001472.1-P | Field mustard | nucleus | 73.22 | 75.11 |
| CDY43399 | Canola | nucleus | 74.48 | 75.11 |
| Bra039344.1-P | Field mustard | nucleus | 74.48 | 75.11 |
| PGSC0003DMT400089342 | Potato | nucleus | 51.05 | 50.62 |
| PGSC0003DMT400029235 | Potato | nucleus | 44.77 | 44.77 |
| Solyc10g005550.1.1 | Tomato | nucleus | 44.35 | 43.62 |
| AT1G56160.1 | Thale cress | nucleus | 48.54 | 39.19 |
| AT1G16490.1 | Thale cress | nucleus | 44.77 | 39.05 |
| AT1G06180.1 | Thale cress | nucleus | 39.33 | 38.21 |
| AT2G31180.1 | Thale cress | nucleus | 35.56 | 34.14 |
| AT1G79180.2 | Thale cress | nucleus | 45.19 | 33.03 |
| AT3G23250.1 | Thale cress | nucleus | 38.91 | 32.63 |
| KRH13720 | Soybean | nucleus | 43.51 | 30.14 |
| KRH43737 | Soybean | nucleus | 48.54 | 30.05 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 45.19 | 29.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:820464 | ProteinID:AEE75249.1 | EMBL:AF062862 | ArrayExpress:AT3G12820 |
| EnsemblPlantsGene:AT3G12820 | RefSeq:AT3G12820 | TAIR:AT3G12820 | RefSeq:AT3G12820-TAIR-G | EnsemblPlants:AT3G12820.1 | TAIR:AT3G12820.1 |
| EMBL:AY519586 | Symbol:AtMYB10 | ProteinID:BAB02426.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009628 |
| GO:GO:0009646 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010043 |
| GO:GO:0010468 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0046686 | GO:GO:1990532 |
| GO:GO:1990641 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_187888.1 | PFAM:PF00249 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0020100 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF883 | UniProt:Q9LTV4 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A7E3F | SEG:seg | : | : |
Description
AtMYB10Transcription factor MYB10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV4]
Coordinates
chr3:-:4073855..4075643
Molecular Weight (calculated)
27318.0 Da
IEP (calculated)
7.473
GRAVY (calculated)
-0.766
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRRAPCCD KSQVKRGPWS DEESERLRSF ILKNGHQNWR SLPKLAGLMR CGKSCRLRWI NYLRPGLKRG NFTKEEEDTI IHLHQAYGNK WSKIASNFPG
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.