Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79305 | Canola | nucleus | 63.3 | 83.81 |
| Bra003619.1-P | Field mustard | nucleus | 66.36 | 81.27 |
| CDX68004 | Canola | nucleus | 66.36 | 81.27 |
| AT1G16490.1 | Thale cress | nucleus | 58.1 | 69.34 |
| Solyc10g005550.1.1 | Tomato | nucleus | 34.86 | 46.91 |
| PGSC0003DMT400029235 | Potato | nucleus | 34.25 | 46.86 |
| PGSC0003DMT400089342 | Potato | nucleus | 34.25 | 46.47 |
| AT3G12820.1 | Thale cress | nucleus | 33.03 | 45.19 |
| AT1G06180.1 | Thale cress | nucleus | 31.5 | 41.87 |
| AT2G31180.1 | Thale cress | nucleus | 31.19 | 40.96 |
| KRH13720 | Soybean | nucleus | 42.2 | 40.0 |
| AT1G56160.1 | Thale cress | nucleus | 35.78 | 39.53 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 43.73 | 39.29 |
| KRH43737 | Soybean | nucleus | 44.95 | 38.08 |
| AT3G23250.1 | Thale cress | nucleus | 31.8 | 36.49 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:844259 | UniProt:A0A1P8AQ56 | ProteinID:ANM58793.1 | ArrayExpress:AT1G79180 |
| EnsemblPlantsGene:AT1G79180 | RefSeq:AT1G79180 | TAIR:AT1G79180 | RefSeq:AT1G79180-TAIR-G | EnsemblPlants:AT1G79180.2 | Symbol:ATMYB63 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 |
| InterPro:IPR017930 | InterPro:Myb-like_dom | InterPro:Myb_dom | RefSeq:NP_001321204.1 | PFAM:PF00249 | PFscan:PS50090 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF462 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00000A0641 | SEG:seg | : | : | : | : |
Description
ATMYB63myb domain protein 63 [Source:TAIR;Acc:AT1G79180]
Coordinates
chr1:+:29786495..29787802
Molecular Weight (calculated)
37645.6 Da
IEP (calculated)
4.941
GRAVY (calculated)
-0.935
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGMSL LLSSQSKQKP LQLFFLFFMI LNVYICKNEG LLRCGKSCRL RWINYLRPDL
101: KRGNFTSEEE ETIIKLHHNY GNKWSKIASQ LPGRTDNEIK NVWHTHLKKR LAQSSGTADE PASPCSSDSV SRGKDDKSSH VEDSLNRETN HRNELSTSMS
201: SGGSNQQDDP KIDELRFEYI EEAYSEFNDI IIQEVDKPDL LEIPFDSDPD IWSFLDTSNS FQQSTANENS SGSRATTEEE SDEDEVKKWF KHLESELGLE
301: EDDNQQQYKE EESSSSSLLK NYELMIH
101: KRGNFTSEEE ETIIKLHHNY GNKWSKIASQ LPGRTDNEIK NVWHTHLKKR LAQSSGTADE PASPCSSDSV SRGKDDKSSH VEDSLNRETN HRNELSTSMS
201: SGGSNQQDDP KIDELRFEYI EEAYSEFNDI IIQEVDKPDL LEIPFDSDPD IWSFLDTSNS FQQSTANENS SGSRATTEEE SDEDEVKKWF KHLESELGLE
301: EDDNQQQYKE EESSSSSLLK NYELMIH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.