Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003619.1-P | Field mustard | nucleus | 97.57 | 90.26 |
| CDX68004 | Canola | nucleus | 97.57 | 90.26 |
| CDX69310 | Canola | nucleus | 21.86 | 80.6 |
| CDX88513 | Canola | nucleus | 79.35 | 72.59 |
| CDX87403 | Canola | nucleus | 79.35 | 72.59 |
| AT1G79180.2 | Thale cress | nucleus | 83.81 | 63.3 |
| CDY35101 | Canola | nucleus | 53.04 | 62.98 |
| CDY55883 | Canola | nucleus | 53.04 | 62.68 |
| CDX73800 | Canola | nucleus | 28.34 | 58.82 |
| CDX81764 | Canola | nucleus | 66.4 | 58.78 |
| CDY51002 | Canola | nucleus | 66.4 | 58.78 |
| PGSC0003DMT400029235 | Potato | nucleus | 44.53 | 46.03 |
| Solyc10g005550.1.1 | Tomato | nucleus | 44.94 | 45.68 |
| PGSC0003DMT400089342 | Potato | nucleus | 44.13 | 45.23 |
| CDY15424 | Canola | nucleus | 38.87 | 43.44 |
| CDY00800 | Canola | nucleus | 36.84 | 41.74 |
| CDY43399 | Canola | nucleus | 39.68 | 41.35 |
| CDY24243 | Canola | nucleus | 39.27 | 41.1 |
| CDY10182 | Canola | nucleus | 40.49 | 40.0 |
| CDY35097 | Canola | nucleus | 22.27 | 39.86 |
| CDY47723 | Canola | nucleus | 40.49 | 39.68 |
| CDY57089 | Canola | nucleus | 40.08 | 39.6 |
| CDY42408 | Canola | nucleus | 47.37 | 39.13 |
| CDY10506 | Canola | nucleus | 47.37 | 39.13 |
| CDY23952 | Canola | nucleus | 38.87 | 39.02 |
| CDX84795 | Canola | nucleus | 38.87 | 39.02 |
| KRH13720 | Soybean | nucleus | 54.25 | 38.84 |
| CDY35519 | Canola | nucleus | 38.87 | 38.25 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 55.06 | 37.36 |
| CDY70982 | Canola | nucleus | 38.06 | 37.15 |
| CDY08989 | Canola | nucleus | 38.87 | 36.36 |
| KRH43737 | Soybean | nucleus | 56.68 | 36.27 |
| CDX92979 | Canola | nucleus | 39.27 | 35.79 |
| CDX77536 | Canola | nucleus | 41.3 | 35.79 |
| CDX85074 | Canola | nucleus | 40.89 | 35.44 |
| CDY15425 | Canola | nucleus | 5.26 | 12.15 |
| CDX73801 | Canola | nucleus | 2.83 | 10.45 |
Protein Annotations
| EnsemblPlants:CDX79305 | EnsemblPlantsGene:GSBRNA2T00131974001 | Gene3D:1.10.10.60 | GO:A0A078CR12 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF462 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX79305 | ProteinID:CDX79305.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EC2583 | MapMan:15.5.2.1 | : | : |
Description
BnaC06g19980D
Coordinates
chrLK031817:+:1230885..1231801
Molecular Weight (calculated)
28291.9 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.946
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS PEEDLKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDVKRG NFTAEEEETI IKLHQNYGNK WSRIASQLPG
101: RTDNEIKNVW HTRLKKRLVQ SSETSPCSSN SVSCGKEDKS QAEGCLNKKT SQDFTTSVSS GGSYNSNQED DPKIGLLFKY SVFNDIIQEV DKPDLLEIPF
201: DSDPDIWSFL DSSNSLQQSG ANEFRAEQES DEDEVKKWFK HMESELE
101: RTDNEIKNVW HTRLKKRLVQ SSETSPCSSN SVSCGKEDKS QAEGCLNKKT SQDFTTSVSS GGSYNSNQED DPKIGLLFKY SVFNDIIQEV DKPDLLEIPF
201: DSDPDIWSFL DSSNSLQQSG ANEFRAEQES DEDEVKKWFK HMESELE
001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTSEEEETI IKLHHNYGNK WSKIASQLPG
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH
Arabidopsis Description
ATMYB63myb domain protein 63 [Source:TAIR;Acc:AT1G79180]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.