Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G56160.1 | CDX73009 | AT1G73730.1 | 18218967 |
| AT1G56160.1 | CDY11093 | AT1G73730.1 | 18218967 |
| AT1G56160.1 | CDY47740 | AT1G73730.1 | 18218967 |
| AT1G56160.1 | CDY60137 | AT1G73730.1 | 18218967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030812.1-P | Field mustard | nucleus | 99.67 | 99.67 |
| CDY10506 | Canola | nucleus | 98.33 | 98.33 |
| AT1G56160.1 | Thale cress | nucleus | 72.58 | 73.31 |
| CDX69310 | Canola | nucleus | 15.38 | 68.66 |
| CDX73800 | Canola | nucleus | 25.75 | 64.71 |
| CDY00800 | Canola | nucleus | 36.12 | 49.54 |
| CDY24243 | Canola | nucleus | 38.46 | 48.73 |
| CDY43399 | Canola | nucleus | 38.46 | 48.52 |
| CDY55883 | Canola | nucleus | 33.44 | 47.85 |
| CDY35101 | Canola | nucleus | 33.11 | 47.6 |
| CDX79305 | Canola | nucleus | 39.13 | 47.37 |
| PGSC0003DMT400089342 | Potato | nucleus | 36.79 | 45.64 |
| CDX87403 | Canola | nucleus | 41.14 | 45.56 |
| PGSC0003DMT400029235 | Potato | nucleus | 36.12 | 45.19 |
| CDX88513 | Canola | nucleus | 40.47 | 44.81 |
| Solyc10g005550.1.1 | Tomato | nucleus | 36.12 | 44.44 |
| CDX68004 | Canola | nucleus | 38.8 | 43.45 |
| CDX81764 | Canola | nucleus | 39.46 | 42.29 |
| CDY51002 | Canola | nucleus | 39.46 | 42.29 |
| CDY15424 | Canola | nucleus | 30.1 | 40.72 |
| CDY35097 | Canola | nucleus | 18.06 | 39.13 |
| CDY57089 | Canola | nucleus | 31.44 | 37.6 |
| CDY23952 | Canola | nucleus | 30.77 | 37.4 |
| CDX84795 | Canola | nucleus | 30.43 | 36.99 |
| CDY10182 | Canola | nucleus | 30.77 | 36.8 |
| CDY47723 | Canola | nucleus | 30.77 | 36.51 |
| CDY35519 | Canola | nucleus | 30.43 | 36.26 |
| CDY70982 | Canola | nucleus | 30.43 | 35.97 |
| CDX92979 | Canola | nucleus | 32.11 | 35.42 |
| CDY08989 | Canola | nucleus | 29.77 | 33.71 |
| CDX77536 | Canola | nucleus | 32.11 | 33.68 |
| KRH13720 | Soybean | nucleus | 38.8 | 33.62 |
| VIT_19s0085g00050.t01 | Wine grape | nucleus | 40.8 | 33.52 |
| CDX85074 | Canola | nucleus | 31.77 | 33.33 |
| KRH43737 | Soybean | nucleus | 40.13 | 31.09 |
| CDX73801 | Canola | nucleus | 5.35 | 23.88 |
| CDY15425 | Canola | nucleus | 3.34 | 9.35 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078I034 | UniProt:A0A078I034 | EnsemblPlants:CDY42408 | ProteinID:CDY42408 |
| ProteinID:CDY42408.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00074705001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF883 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEF996 | SEG:seg |
Description
BnaA08g00060DBnaA08g00060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I034]
Coordinates
chrLK032523:+:248717..249795
Molecular Weight (calculated)
34437.0 Da
IEP (calculated)
5.948
GRAVY (calculated)
-0.845
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGRAPCCD KSKVKRGPWS PKEDLTLITF IQKHGHHNWR SLPKLAGLMR CGKSCRLRWI NYLRPDVKRG NFSKEEEDAI IHFHQTLGNK WSKIASFLPG
101: RTDNEIKNVW NTHLKKRLFP NSSSYSSISC PNDRPTEADQ KKNYAIVQEE RNSRDNESQD PPSSSHLHGK HMHTKPELHE VNELHEIQLL LDHDDFDDIT
201: SAFLQTTETL FPVQPLDSLL QTHTLTGFHN TGGTTQEAIE PQSFDHSQPE IPCGFEETNG EFDLWSQPSP NSEEFDEWLS FMDNQAYFDD FTLFGEVCL
101: RTDNEIKNVW NTHLKKRLFP NSSSYSSISC PNDRPTEADQ KKNYAIVQEE RNSRDNESQD PPSSSHLHGK HMHTKPELHE VNELHEIQLL LDHDDFDDIT
201: SAFLQTTETL FPVQPLDSLL QTHTLTGFHN TGGTTQEAIE PQSFDHSQPE IPCGFEETNG EFDLWSQPSP NSEEFDEWLS FMDNQAYFDD FTLFGEVCL
001: MGKGRAPCCD KNKVKRGPWS PQEDLTLITF IQKHGHQNWR SLPKLAGLLR CGKSCRLRWI NYLRPDVKRG NFSKKEEDAI IHYHQTLGNK WSKIASFLPG
101: RTDNEIKNVW NTHLKKRLTP SSSSSSLSST HDQSTKADHD KNCDGAQEEI HSGLNESQNS ATSSHHQGEC MHTKPELHEV NGLNEIQFLL DHDDFDDITS
201: EFLQDNDILF PLDSLLHNHQ THISTQEMTR EVTKSQSFDH PQPDIPCGFE DTNEESDLRR QLVESTTPNN EYDEWFNFID NQTYFDDFNF VGEVCL
101: RTDNEIKNVW NTHLKKRLTP SSSSSSLSST HDQSTKADHD KNCDGAQEEI HSGLNESQNS ATSSHHQGEC MHTKPELHEV NGLNEIQFLL DHDDFDDITS
201: EFLQDNDILF PLDSLLHNHQ THISTQEMTR EVTKSQSFDH PQPDIPCGFE DTNEESDLRR QLVESTTPNN EYDEWFNFID NQTYFDDFNF VGEVCL
Arabidopsis Description
ATMYB72MYB72 [Source:UniProtKB/TrEMBL;Acc:A0A178W4I7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.