CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY10506
CDY42408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73730.1	CDY10506	AT1G56160.1	18218967
AT1G73730.1	CDY42408	AT1G56160.1	18218967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008110.1-P	Field mustard	nucleus	92.1	99.44
AT1G73730.1	Thale cress	nucleus	78.52	80.6
CDX73009	Canola	nucleus	80.76	80.34
CDY60137	Canola	nucleus	80.58	79.9
CDY11093	Canola	nucleus	76.12	78.41
HORVU0Hr1G011440.1	Barley	nucleus	42.61	64.08
VIT_06s0004g01610.t01	Wine grape	nucleus	52.58	49.12
KRH23176	Soybean	nucleus	49.66	48.9
KRH10163	Soybean	nucleus	49.31	48.64
CDX81161	Canola	nucleus	14.26	43.23
Solyc01g014480.2.1	Tomato	nucleus	48.11	41.48
PGSC0003DMT400076890	Potato	nucleus	48.11	41.36
Solyc01g006650.1.1	Tomato	nucleus	45.7	40.3
GSMUA_Achr9P27680_001	Banana	nucleus	41.92	40.0
PGSC0003DMT400055102	Potato	nucleus	45.88	39.97
TraesCS5D01G273600.1	Wheat	nucleus	41.92	39.87
Os09t0490200-01	Rice	nucleus	41.75	39.77
Zm00001d020939_P001	Maize	nucleus	41.07	39.24
GSMUA_Achr3P11160_001	Banana	nucleus	38.49	39.23
EER99089	Sorghum	nucleus	40.89	39.08
GSMUA_Achr8P25580_001	Banana	nucleus	41.24	38.96
TraesCS5A01G265700.1	Wheat	nucleus	38.49	38.42
CDX82228	Canola	nucleus	35.57	38.26
TraesCS5B01G265400.1	Wheat	nucleus	38.14	38.14
CDY32390	Canola	nucleus	35.57	37.7
TraesCS7A01G246100.1	Wheat	nucleus	39.35	37.3
TraesCS7B01G145400.1	Wheat	nucleus	39.18	37.19
TraesCS7D01G244600.1	Wheat	nucleus	39.0	36.97
Os08t0508700-01	Rice	nucleus	39.0	36.67
OQU80929	Sorghum	nucleus	38.66	36.41
CDY27563	Canola	nucleus	36.25	35.95
CDY38540	Canola	nucleus	34.54	35.7
CDX83250	Canola	nucleus	34.88	35.61
Zm00001d031445_P001	Maize	nucleus	38.66	35.6
CDY70411	Canola	nucleus	9.62	33.33
CDX85778	Canola	nucleus	25.6	32.75
CDY40078	Canola	nucleus	25.43	32.67
CDY46568	Canola	nucleus	9.11	31.55
CDX92408	Canola	nucleus	25.6	29.86
CDY59518	Canola	nucleus	25.77	29.47
CDX78369	Canola	nucleus	14.95	26.44
CDY60391	Canola	nucleus	18.73	25.65
CDY06379	Canola	nucleus	20.62	24.64
CDY19606	Canola	nucleus	19.42	24.57
CDY09099	Canola	nucleus	15.81	23.71
CDY14539	Canola	nucleus	13.57	21.24
CDY08821	Canola	nucleus	12.71	20.85

Protein Annotations

Gene3D:1.10.3180.10	MapMan:11.5.2.4	MapMan:15.5.11	GO:A0A078I9Z1	UniProt:A0A078I9Z1	EnsemblPlants:CDY47740
ProteinID:CDY47740	ProteinID:CDY47740.1	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00088016001	InterPro:IPR023278
PFAM:PF04873	PANTHER:PTHR33305	SUPFAM:SSF116768	UniParc:UPI0004EEA200	SEG:seg	:

Description

BnaA02g16550DBnaA02g16550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9Z1]

Coordinates

chrLK032732:+:83570..87927

Molecular Weight (calculated)

65877.4 Da

IEP (calculated)

5.367

GRAVY (calculated)

-0.744

Length

582 amino acids

Sequence
(BLAST)

001: MNNYIFIIRE ELKEKNLKLF SKGFIFFEQT CVTDLAMSVA DIRMENEPDD IASDNVAEID VSDEDIDAED LERRMWKDRV RLKRIKERTK SGSQAKEAPK
101: KISDQAQRKK MSRAQDGILK YMLKLMEVCK VRGFVYGIIP EKGKPVSGSS DNIRAWWKEK VKFDKNGPAA IAKYEEECIA FGKSDRNRNS QFVLQDLQDA
201: TLGSLLSSLM QHCDPPQRKY PLEKGTPPPW WPTGDEEWWV KLGLGKSQSP PYRKPHDLKK MWKVGVLTAV INHMLPDVAK IKRHVRQSKC LQDKMTAKES
301: AIWLAVLNQE ESLVQQNSSD NGTSNVTEIR RRGNNNAENM VNSDGDYDVD GTEEASGSLT ATSQPVRDQD KAKKQRRRKR PRSISGTVSR QEEEQRNILP
401: DMYHVDASLL GHNINGTHHH QEGVLEPNIA LGAEENGLEV IVPEFDNNYT YFPPVSEQAM MPVDERPMLY GPNPNQELQF GSGYNFYNPS AVLVNNQEQD
501: VIHTRIEMNA PRSNGFEASV GVGAPDGLHE DGVAGRDLPP QFQRDSNILS PFNDLAAFDS STFYSGFDSY GAFDDDFSWF GA

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.