CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024354.1-P	Field mustard	nucleus	96.06	96.06
CDY14539	Canola	nucleus	93.8	89.52
CDX81161	Canola	nucleus	33.52	61.98
AT5G65100.1	Thale cress	nucleus	80.28	51.17
CDX78369	Canola	nucleus	45.92	49.54
CDX85778	Canola	nucleus	56.9	44.4
CDY40078	Canola	nucleus	56.34	44.15
PGSC0003DMT400043160	Potato	nucleus	26.2	33.45
KRH43217	Soybean	nucleus	36.06	28.26
CDY70411	Canola	nucleus	12.68	26.79
KRH59382	Soybean	nucleus	34.65	26.62
KRG97597	Soybean	nucleus	34.65	26.51
KRH31276	Soybean	nucleus	28.45	25.38
VIT_00s0357g00120.t01	Wine grape	nucleus	34.37	25.21
CDY46568	Canola	nucleus	11.83	25.0
PGSC0003DMT400053147	Potato	nucleus	30.7	24.11
Solyc04g054840.1.1	Tomato	nucleus	33.24	23.46
Solyc03g096630.1.1	Tomato	nucleus	28.17	23.04
CDY60391	Canola	nucleus	26.48	22.12
CDY09099	Canola	nucleus	23.94	21.91
CDY19606	Canola	nucleus	26.48	20.43
CDY06379	Canola	nucleus	26.48	19.3
GSMUA_Achr10P...	Banana	nucleus	17.75	18.69
Os04t0456900-00	Rice	nucleus	16.9	17.7
CDY38540	Canola	nucleus	27.89	17.58
TraesCS2D01G320800.1	Wheat	nucleus	22.82	17.42
CDX83250	Canola	nucleus	27.89	17.37
TraesCS2A01G342500.1	Wheat	nucleus	22.54	17.17
CDX82228	Canola	nucleus	25.63	16.82
TraesCS2B01G340200.1	Wheat	nucleus	21.97	16.74
CDY32390	Canola	nucleus	25.35	16.39
HORVU2Hr1G079900.1	Barley	nucleus	21.69	16.38
CDX92408	Canola	nucleus	22.82	16.23
Zm00001d050861_P001	Maize	nucleus	20.0	16.1
CDY27563	Canola	nucleus	26.2	15.84
TraesCS3D01G390000.1	Wheat	nucleus	20.28	15.72
CDY59518	Canola	nucleus	22.54	15.72
TraesCS3A01G396000.1	Wheat	nucleus	19.72	15.49
TraesCS3B01G428000.1	Wheat	nucleus	18.87	15.33
Zm00001d016924_P001	Maize	nucleus	18.31	15.15
HORVU3Hr1G089250.3	Barley	nucleus	19.72	15.15
KXG26452	Sorghum	nucleus	20.0	15.11
Zm00001d003451_P001	Maize	nucleus	22.25	14.85
EES05301	Sorghum	nucleus	19.72	14.64
TraesCS6B01G376700.1	Wheat	nucleus	18.87	14.63
TraesCS6D01G326600.1	Wheat	nucleus	18.87	14.63
TraesCSU01G080900.1	Wheat	nucleus	18.31	14.38
CDY11093	Canola	nucleus	21.69	13.63
CDX73009	Canola	nucleus	21.13	12.82
CDY47740	Canola	nucleus	20.85	12.71
CDY60137	Canola	nucleus	20.56	12.44

Protein Annotations

MapMan:11.5.2.4	MapMan:15.5.11	UniProt:A0A078F5Z6	EnsemblPlants:CDY08821	ProteinID:CDY08821	ProteinID:CDY08821.1
GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00000783001	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF1	UniParc:UPI0004EDE4A3	SEG:seg

Description

BnaA06g24030DBnaA06g24030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5Z6]

Coordinates

chrLK031989:+:729257..730714

Molecular Weight (calculated)

40465.6 Da

IEP (calculated)

4.204

GRAVY (calculated)

-0.887

Length

355 amino acids

Sequence
(BLAST)

001: MVEVQDMEPL SPIQDDDDCE DEEDELDRVN EDISYDDLKK RMWKDRNLMC KLKQQKQDDH DLSYPSSSTS PPSSSPSSSA IVRRAEASRR KKMARSQDSV
101: LKYMMKIMEV CKARGFVYGI VPEKGKPVTG SSDSLRRWWK ENVQFDQTAP TAVADYLTLA AAQLISQSKS LLKRLKISDD DDEGEEDQEP ARLVDLDQEL
201: MGNKRKGEFV EEGAMLSNVY TCQNSSCPSS DVSLGFVDKN LRTGHEMECL YGTQEPIYQS SVSSDGLVRP MATSDDDYSA SSKGKDTIDY LNQDGNWLDY
301: LWFERLHDFN CSDQATTVDL NQLPDHSDSN PTVNEEEFSL WDMGWEDRDK YMSQD

Best Arabidopsis Sequence Match ( AT5G10120.1 )
(BLAST)

001: MVEVEELEPL SPMDDEEEEI SYDDLKRRMW KDRNLMEKKL KQQKRHSNDV VSFTTHRAEA SRRKKMARSQ DSVLKYMMKI MEVCKAKGFV YGIVPEKGKP
101: ITGSSDSLRR WWKENVQFDQ NAPDAITDYL ALAAAAAAAE LIDKSSSSSS LLHMLQELQD TTLGSLLSAL MQHCMPPQRR FPLEKGIAPP WWPTGTELWW
201: GEQGAAHEHG APPYRKPHDL RKSWKVSVLA AVIKHMSPNL GRVRRLARQS KSLQDKMMAK ETDTWSRVLN QEEALLNIKD LKISEDQDDQ ESSGSKRKSE
301: SMEPSKSVYT CQNSSCPKSD VSFGFGDKNS RTGHEIQCLY GSNQEPSQSG EYTSSLLETV PSIVTNSTSE DDYYNVSSRA LDKRDDDDHS INGNWMEYFW
401: LEKMQQEFHC SRRFEDDEGT GTDFDQLTES DRSDNVNLNQ LTKSDRSDNV NRSAFSVWDM GCEDKDIYMF D

Arabidopsis Description

EIL4Putative ETHYLENE INSENSITIVE 3-like 4 protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LX16]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.