CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014281.1-P	Field mustard	nucleus	98.81	98.81
CDY70411	Canola	nucleus	94.64	94.64
CDX81161	Canola	nucleus	22.62	19.79
CDY09099	Canola	nucleus	38.69	16.75
CDY60391	Canola	nucleus	41.67	16.47
CDY19606	Canola	nucleus	43.45	15.87
CDY06379	Canola	nucleus	44.64	15.4
CDY59518	Canola	nucleus	39.29	12.97
CDX82228	Canola	nucleus	41.67	12.94
CDY38540	Canola	nucleus	42.86	12.79
CDY27563	Canola	nucleus	44.64	12.78
CDY32390	Canola	nucleus	41.67	12.75
CDX92408	Canola	nucleus	37.5	12.63
CDX83250	Canola	nucleus	42.26	12.46
CDX78369	Canola	nucleus	23.81	12.16
CDY08821	Canola	nucleus	25.0	11.83
CDY14539	Canola	nucleus	26.19	11.83
CDY11093	Canola	nucleus	32.74	9.73
CDX73009	Canola	nucleus	32.14	9.23
CDY47740	Canola	nucleus	31.55	9.11
CDX85778	Canola	nucleus	24.4	9.01
CDY60137	Canola	nucleus	30.95	8.86
CDY40078	Canola	nucleus	23.81	8.83

Protein Annotations

EnsemblPlants:CDY46568	EnsemblPlantsGene:GSBRNA2T00085793001	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	ncoils:Coil	PANTHER:PTHR33305	PANTHER:PTHR33305:SF1	PFAM:PF04873
ProteinID:CDY46568	ProteinID:CDY46568.1	UniParc:UPI0004EEFC28	UniProt:A0A078IBI2	MapMan:11.5.2.4	:

Description

BnaA08g02070DBnaA08g02070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBI2]

Coordinates

chrLK032675:-:165089..166186

Molecular Weight (calculated)

19784.3 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.958

Length

168 amino acids

Sequence
(BLAST)

001: MRSNTGLFFS QPQLIIDDDG HTDDEFDVDK LEKRIWRQGM RLQRLKERSK NKERDDEQLI SKCMFKMMEV CNAQGFVYGI IPQNAKPIIS ASHNLQEWWK
101: DKVRFDLNGP IAIAKHQESN NMVCESNEEE AQNHQEHWHF GRTEGNIFER SSVEDLMKLS SNNNKRTV

Best Arabidopsis Sequence Match ( AT3G20770.1 )
(BLAST)

001: MMFNEMGMCG NMDFFSSGSL GEVDFCPVPQ AEPDSIVEDD YTDDEIDVDE LERRMWRDKM RLKRLKEQDK GKEGVDAAKQ RQSQEQARRK KMSRAQDGIL
101: KYMLKMMEVC KAQGFVYGII PENGKPVTGA SDNLREWWKD KVRFDRNGPA AITKYQAENN IPGIHEGNNP IGPTPHTLQE LQDTTLGSLL SALMQHCDPP
201: QRRFPLEKGV PPPWWPNGKE DWWPQLGLPK DQGPAPYKKP HDLKKAWKVG VLTAVIKHMF PDIAKIRKLV RQSKCLQDKM TAKESATWLA IINQEESLAR
301: ELYPESCPPL SLSGGSCSLL MNDCSQYDVE GFEKESHYEV EELKPEKVMN SSNFGMVAKM HDFPVKEEVP AGNSEFMRKR KPNRDLNTIM DRTVFTCENL
401: GCAHSEISRG FLDRNSRDNH QLACPHRDSR LPYGAAPSRF HVNEVKPVVG FPQPRPVNSV AQPIDLTGIV PEDGQKMISE LMSMYDRNVQ SNQTSMVMEN
501: QSVSLLQPTV HNHQEHLQFP GNMVEGSFFE DLNIPNRANN NNSSNNQTFF QGNNNNNNVF KFDTADHNNF EAAHNNNNNS SGNRFQLVFD STPFDMASFD
601: YRDDMSMPGV VGTMDGMQQK QQDVSIWF

Arabidopsis Description

EIN3Protein ETHYLENE INSENSITIVE 3 [Source:UniProtKB/Swiss-Prot;Acc:O24606]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.