CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76980
CDX80503
CDX87090
CDX88173
CDY19807
CDY35358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20770.1	CDX76980	AT2G25490.1	14675532
AT3G20770.1	CDY35358	AT2G25490.1	14675532
AT3G20770.1	CDX76980	AT2G25490.1	14675533
AT3G20770.1	CDY35358	AT2G25490.1	14675533
AT3G20770.1	CDX80503	AT5G25350.1	14675532
AT3G20770.1	CDX87090	AT5G25350.1	14675532
AT3G20770.1	CDX88173	AT5G25350.1	14675532
AT3G20770.1	CDY19807	AT5G25350.1	14675532
AT3G20770.1	CDX80503	AT5G25350.1	14675533
AT3G20770.1	CDX87090	AT5G25350.1	14675533
AT3G20770.1	CDX88173	AT5G25350.1	14675533
AT3G20770.1	CDY19807	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023927.1-P	Field mustard	nucleus	98.82	94.81
CDY19606	Canola	nucleus	78.82	72.83
CDY06379	Canola	nucleus	79.76	69.61
CDY27563	Canola	nucleus	86.12	62.35
CDY32390	Canola	nucleus	75.06	58.11
CDX82228	Canola	nucleus	73.65	57.86
AT3G20770.1	Thale cress	nucleus	84.24	57.01
CDY38540	Canola	nucleus	58.82	44.41
CDY70411	Canola	nucleus	17.41	44.05
CDX83250	Canola	nucleus	59.06	44.04
CDY46568	Canola	nucleus	16.47	41.67
KRG89856	Soybean	nucleus	58.12	39.58
KRH18695	Soybean	nucleus	57.41	39.29
KRH18696	Soybean	nucleus	54.59	37.54
KRH73465	Soybean	nucleus	53.41	36.97
KRH14682	Soybean	nucleus	52.47	36.56
PGSC0003DMT400022477	Potato	nucleus	52.71	36.48
Solyc06g073720.1.1	Tomato	nucleus	52.0	36.23
Solyc01g009170.2.1	Tomato	nucleus	52.24	36.16
VIT_06s0009g01380.t01	Wine grape	nucleus	51.53	35.9
PGSC0003DMT400015148	Potato	nucleus	51.06	35.57
Solyc06g073730.1.1	Tomato	nucleus	48.71	34.21
PGSC0003DMT400015145	Potato	nucleus	47.06	33.39
CDX81161	Canola	nucleus	14.35	31.77
GSMUA_Achr6P15930_001	Banana	nucleus	37.41	30.7
Os02t0689132-00	Rice	nucleus	12.71	30.51
GSMUA_Achr10P...	Banana	nucleus	36.47	29.69
CDY09099	Canola	nucleus	26.12	28.61
GSMUA_Achr2P11540_001	Banana	nucleus	39.53	27.81
GSMUA_Achr8P21550_001	Banana	nucleus	41.41	27.76
GSMUA_Achr5P27670_001	Banana	nucleus	40.47	27.43
GSMUA_Achr9P17080_001	Banana	nucleus	39.53	27.01
EER94933	Sorghum	nucleus	40.71	26.91
GSMUA_Achr11P...	Banana	nucleus	37.41	26.86
TraesCS4B01G175100.1	Wheat	nucleus	40.94	26.77
Zm00001d047563_P001	Maize	nucleus	40.24	26.64
Zm00001d028974_P001	Maize	nucleus	40.47	26.58
CDY08821	Canola	nucleus	22.12	26.48
GSMUA_Achr3P09440_001	Banana	nucleus	32.94	26.46
TraesCS4D01G177000.1	Wheat	nucleus	40.47	26.42
HORVU4Hr1G051680.1	Barley	nucleus	40.47	26.42
TraesCS4A01G129400.1	Wheat	nucleus	33.88	26.33
Zm00001d007188_P001	Maize	nucleus	35.53	25.38
CDY14539	Canola	nucleus	21.88	25.0
OQU90496	Sorghum	nucleus	34.35	24.58
TraesCS2D01G099400.1	Wheat	nucleus	35.76	24.52
TraesCS2A01G099900.1	Wheat	nucleus	35.29	24.27
TraesCS2B01G116900.1	Wheat	nucleus	34.82	23.91
CDX78369	Canola	nucleus	17.65	22.8
CDY59518	Canola	nucleus	25.65	21.41
CDX92408	Canola	nucleus	24.94	21.24
Zm00001d022530_P001	Maize	nucleus	22.35	20.93
CDY11093	Canola	nucleus	26.35	19.82
CDX85778	Canola	nucleus	20.71	19.34
CDY40078	Canola	nucleus	20.24	18.98
CDY47740	Canola	nucleus	25.65	18.73
CDY60137	Canola	nucleus	25.65	18.57
CDX73009	Canola	nucleus	25.41	18.46

Protein Annotations

MapMan:11.5.2.4	MapMan:15.5.11	UniProt:A0A078J732	EnsemblPlants:CDY60391	ProteinID:CDY60391	ProteinID:CDY60391.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00029557001	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF1	UniParc:UPI0004EEB56D
SEG:seg	:	:	:	:	:

Description

BnaA01g36840DBnaA01g36840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J732]

Coordinates

chrLK033875:+:21225..23873

Molecular Weight (calculated)

48646.9 Da

IEP (calculated)

4.655

GRAVY (calculated)

-0.827

Length

425 amino acids

Sequence
(BLAST)

001: MFNEMGMLGG NMDLYSSSSL GELDFCPAPQ LEPDSIVEDD YTDDEIDVDE LERRMWRDKM RLKRLKEQDN KSSKQGVDYD SAKQRQSQEQ ARRKKMSRAQ
101: DGILKYMLKM MEVCKAQGFV YGIIPENGKP VTGASDNLRE WWKDKVRFDR NGPAAISGGS CSLLMNDCDQ YDVEGFEKET RYEVEEVKPV KEEVSSEFMR
201: KRKPDRDLNA IMDRTVFFTC ENPGCVHSEI SRGFLDRSSR DNHQLGCLHR GIKPVVGFSQ PRPVNSVDQP IDLTGIGVPE DGQKMISELM SMYDRNVQSN
301: QTSMVVENQN VTLLQPMVQN QFQGNIVEGS FFEDFNIPNR ANNSNNNNQM FFQGNNINGF NYDTTHNNNF EAAQNNSRSN RFQDVYDSAP FDMASFVYRD
401: DMSMPGAAGT MDGMHQKQHD ASLWF

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.