CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05167
KRH15886
KRH52439
KRH61771

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27050.1	KRH05167	AT2G25490.1	14675533
AT2G27050.1	KRH15886	AT2G25490.1	14675533
AT2G27050.1	KRH52439	AT2G25490.1	14675533
AT2G27050.1	KRH61771	AT2G25490.1	14675533
AT2G27050.1	KRH05167	AT5G25350.1	14675533
AT2G27050.1	KRH15886	AT5G25350.1	14675533
AT2G27050.1	KRH52439	AT5G25350.1	14675533
AT2G27050.1	KRH61771	AT5G25350.1	14675533
AT3G20770.1	KRH05167	AT2G25490.1	14675532
AT3G20770.1	KRH15886	AT2G25490.1	14675532
AT3G20770.1	KRH52439	AT2G25490.1	14675532
AT3G20770.1	KRH61771	AT2G25490.1	14675532
AT3G20770.1	KRH05167	AT2G25490.1	14675533
AT3G20770.1	KRH15886	AT2G25490.1	14675533
AT3G20770.1	KRH52439	AT2G25490.1	14675533
AT3G20770.1	KRH61771	AT2G25490.1	14675533
AT3G20770.1	KRH05167	AT5G25350.1	14675532
AT3G20770.1	KRH15886	AT5G25350.1	14675532
AT3G20770.1	KRH52439	AT5G25350.1	14675532
AT3G20770.1	KRH61771	AT5G25350.1	14675532
AT3G20770.1	KRH05167	AT5G25350.1	14675533
AT3G20770.1	KRH15886	AT5G25350.1	14675533
AT3G20770.1	KRH52439	AT5G25350.1	14675533
AT3G20770.1	KRH61771	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18695	Soybean	nucleus	82.36	81.96
KRG89856	Soybean	nucleus	82.69	81.89
KRH14682	Soybean	nucleus	77.51	78.52
KRH73465	Soybean	nucleus	77.18	77.69
Solyc06g073720.1.1	Tomato	nucleus	64.89	65.74
VIT_06s0009g01380.t01	Wine grape	nucleus	64.56	65.41
PGSC0003DMT400015148	Potato	nucleus	64.4	65.25
CDX82228	Canola	nucleus	56.96	65.06
PGSC0003DMT400022477	Potato	nucleus	64.08	64.5
Solyc06g073730.1.1	Tomato	nucleus	62.78	64.13
CDY32390	Canola	nucleus	56.8	63.93
Bra000528.1-P	Field mustard	nucleus	59.06	63.92
CDY38540	Canola	nucleus	58.09	63.77
PGSC0003DMT400015145	Potato	nucleus	61.65	63.61
CDX83250	Canola	nucleus	58.58	63.51
Solyc01g009170.2.1	Tomato	nucleus	62.95	63.35
AT2G27050.1	Thale cress	nucleus	59.55	63.01
Bra001802.1-P	Field mustard	nucleus	58.58	62.31
CDY27563	Canola	nucleus	57.93	60.99
AT3G20770.1	Thale cress	nucleus	61.81	60.83
CDY19606	Canola	nucleus	41.42	55.65
CDY60391	Canola	nucleus	37.54	54.59
GSMUA_Achr6P15930_001	Banana	nucleus	45.63	54.44
CDY06379	Canola	nucleus	42.88	54.41
Bra035746.1-P	Field mustard	nucleus	43.04	54.29
Bra023927.1-P	Field mustard	nucleus	38.19	53.27
GSMUA_Achr10P...	Banana	nucleus	44.82	53.07
GSMUA_Achr3P09440_001	Banana	nucleus	43.04	50.28
TraesCS4A01G129400.1	Wheat	nucleus	43.85	49.54
GSMUA_Achr5P27670_001	Banana	nucleus	49.35	48.64
GSMUA_Achr2P11540_001	Banana	nucleus	47.41	48.51
GSMUA_Achr9P17080_001	Banana	nucleus	47.25	46.95
GSMUA_Achr8P21550_001	Banana	nucleus	47.73	46.53
EER94933	Sorghum	nucleus	48.38	46.5
GSMUA_Achr11P...	Banana	nucleus	44.34	46.28
Zm00001d022530_P001	Maize	nucleus	33.66	45.81
Zm00001d028974_P001	Maize	nucleus	47.73	45.6
Zm00001d047563_P001	Maize	nucleus	47.25	45.48
KRH31276	Soybean	nucleus	29.29	45.48
TraesCS4B01G175100.1	Wheat	nucleus	47.73	45.38
TraesCS4D01G177000.1	Wheat	nucleus	47.41	45.01
HORVU4Hr1G051680.1	Barley	nucleus	47.25	44.85
Zm00001d007188_P001	Maize	nucleus	41.91	43.53
KRH43217	Soybean	nucleus	31.88	43.49
KRH59382	Soybean	nucleus	32.04	42.86
OQU90496	Sorghum	nucleus	40.78	42.42
KRG97597	Soybean	nucleus	31.39	41.81
TraesCS2D01G099400.1	Wheat	nucleus	41.91	41.77
TraesCS2A01G099900.1	Wheat	nucleus	41.26	41.26
TraesCS2B01G116900.1	Wheat	nucleus	41.26	41.2
Os02t0689132-00	Rice	nucleus	11.65	40.68
KRH10163	Soybean	nucleus	37.86	39.66
KRH23176	Soybean	nucleus	37.7	39.42
KRH56267	Soybean	nucleus	35.76	28.85

Protein Annotations

Gene3D:1.10.3180.10	EntrezGene:100818629	MapMan:11.5.2.4	MapMan:15.5.11	UniProt:A0A0R4J4T6	EMBL:ACUP02008118
ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	EnsemblPlantsGene:GLYMA_13G076800	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR023278	EnsemblPlants:KRH18696	ProteinID:KRH18696
ProteinID:KRH18696.1	PFAM:PF04873	PANTHER:PTHR33305	PANTHER:PTHR33305:SF1	SUPFAM:SSF116768	UniParc:UPI00018C6C25

Description

hypothetical protein

Coordinates

chr13:+:18149791..18153194

Molecular Weight (calculated)

70092.1 Da

IEP (calculated)

5.541

GRAVY (calculated)

-0.706

Length

618 amino acids

Sequence
(BLAST)

001: MMMMFDEMGL CNNLDMISAP LGEEDITTRQ TDPEVIVEDD FTDEEIGVDE LEQRMWKDKM RLKRLKEQSK SKEGIDAVKQ RQSQEQARRK KMSRAQDGIL
101: KYMLKMMEVC KAQGFVYGII PEKGKPVTGA SDNLREWWKD KVRFDRNGPA AIAKYQADNT IPGRNDGCNS IGPTPHTLQE LQDTTLGSLL SALMQHCDPP
201: QRRFPLEKGV PPPWWPTGNE EWWPQIGLSK DQNSPPYKKP HDLKKAWKVG VLTAVIKHMS PDIAKIRKLV RQSKCLQDKM TAKESATWLA IINQEEALAR
301: ELYPDYIPPL ASAGGSGSLV INDSNEYDVE GGEDEPNFDV EDCKHENLHT SNLGMERVRV TLPVQQPSFS IKGETVTNLD FIRKRKVSND FNMMDLKIYT
401: CEHPQCPYSQ VRLGFPDRIS RDNHQLICAY RGTSDFGGPS FPVNEIKPVV HPPSFVQPKS TAQPGSMVPP VIDLTGLEVS DNGQKMITDL MTNYDTNVRG
501: NKKTSSCNHL AAENFDLPQH AMQQQQDNFI RGQGITAEGN IFDEANMPNN HHMFAREEGQ FDRFKALNAP FETNHNNNNF HSMFGSLCDL ASFDFKEDMQ
601: GVGMDTLQKQ PDISIWYQ

Best Arabidopsis Sequence Match ( AT1G73730.1 )
(BLAST)

001: MGDLAMSVAD IRMENEPDDL ASDNVAEIDV SDEEIDADDL ERRMWKDRVR LKRIKERQKA GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV
101: CKVRGFVYGI IPEKGKPVSG SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS LMQHCDPPQR KYPLEKGTPP
201: PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE
301: THRRGNNADR RKPVVNSDSD YDVDGTEEAS GSVSSKDSRR NQIQKEQPTA ISHSVRDQDK AEKHRRRKRP RIRSGTVNRQ EEEQPEAQQR NILPDMNHVD
401: APLLEYNING THQEDDVVDP NIALGPEDNG LELVVPEFNN NYTYLPLVNE QTMMPVDERP MLYGPNPNQE LQFGSGYNFY NPSAVFVHNQ EDDILHTQIE
501: MNTQAPPHNS GFEEAPGGVL QPLGLLGNED GVTGSELPQY QSGILSPLTD LDFDYGGFGD DFSWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.