Factsheet for GSMUA_Achr5P27670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15920_001
GSMUA_Achr4P30680_001
GSMUA_Achr6P05220_001
GSMUA_Achr9P28510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27050.1	GSMUA_Achr10P...	AT2G25490.1	14675533
AT2G27050.1	GSMUA_Achr2P15920_001	AT2G25490.1	14675533
AT2G27050.1	GSMUA_Achr4P30680_001	AT2G25490.1	14675533
AT2G27050.1	GSMUA_Achr6P05220_001	AT2G25490.1	14675533
AT2G27050.1	GSMUA_Achr9P28510_001	AT2G25490.1	14675533
AT2G27050.1	GSMUA_Achr10P...	AT5G25350.1	14675533
AT2G27050.1	GSMUA_Achr2P15920_001	AT5G25350.1	14675533
AT2G27050.1	GSMUA_Achr4P30680_001	AT5G25350.1	14675533
AT2G27050.1	GSMUA_Achr6P05220_001	AT5G25350.1	14675533
AT2G27050.1	GSMUA_Achr9P28510_001	AT5G25350.1	14675533
AT3G20770.1	GSMUA_Achr10P...	AT2G25490.1	14675532
AT3G20770.1	GSMUA_Achr2P15920_001	AT2G25490.1	14675532
AT3G20770.1	GSMUA_Achr4P30680_001	AT2G25490.1	14675532
AT3G20770.1	GSMUA_Achr6P05220_001	AT2G25490.1	14675532
AT3G20770.1	GSMUA_Achr9P28510_001	AT2G25490.1	14675532
AT3G20770.1	GSMUA_Achr10P...	AT2G25490.1	14675533
AT3G20770.1	GSMUA_Achr2P15920_001	AT2G25490.1	14675533
AT3G20770.1	GSMUA_Achr4P30680_001	AT2G25490.1	14675533
AT3G20770.1	GSMUA_Achr6P05220_001	AT2G25490.1	14675533
AT3G20770.1	GSMUA_Achr9P28510_001	AT2G25490.1	14675533
AT3G20770.1	GSMUA_Achr10P...	AT5G25350.1	14675532
AT3G20770.1	GSMUA_Achr2P15920_001	AT5G25350.1	14675532
AT3G20770.1	GSMUA_Achr4P30680_001	AT5G25350.1	14675532
AT3G20770.1	GSMUA_Achr6P05220_001	AT5G25350.1	14675532
AT3G20770.1	GSMUA_Achr9P28510_001	AT5G25350.1	14675532
AT3G20770.1	GSMUA_Achr10P...	AT5G25350.1	14675533
AT3G20770.1	GSMUA_Achr2P15920_001	AT5G25350.1	14675533
AT3G20770.1	GSMUA_Achr4P30680_001	AT5G25350.1	14675533
AT3G20770.1	GSMUA_Achr6P05220_001	AT5G25350.1	14675533
AT3G20770.1	GSMUA_Achr9P28510_001	AT5G25350.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	61.72	74.14
GSMUA_Achr2P11540_001	Banana	nucleus	71.29	74.01
GSMUA_Achr6P15930_001	Banana	nucleus	60.13	72.78
GSMUA_Achr11P...	Banana	nucleus	65.07	68.92
GSMUA_Achr8P21550_001	Banana	nucleus	64.27	63.56
GSMUA_Achr9P17080_001	Banana	nucleus	62.68	63.18
GSMUA_Achr3P09440_001	Banana	nucleus	52.47	62.19
TraesCS4A01G129400.1	Wheat	nucleus	52.15	59.78
Os03t0324300-02	Rice	nucleus	59.65	58.35
Os03t0324200-01	Rice	nucleus	59.49	57.92
EER94933	Sorghum	nucleus	58.69	57.23
Zm00001d028974_P001	Maize	nucleus	58.05	56.26
HORVU4Hr1G051680.1	Barley	nucleus	58.37	56.22
Zm00001d047563_P001	Maize	nucleus	57.42	56.07
TraesCS4D01G177000.1	Wheat	nucleus	57.89	55.76
TraesCS4B01G175100.1	Wheat	nucleus	57.74	55.69
KRH14682	Soybean	nucleus	51.99	53.44
Os07t0685700-01	Rice	mitochondrion, nucleus	50.08	52.95
KRH73465	Soybean	nucleus	51.67	52.77
KRH18695	Soybean	nucleus	51.67	52.17
KRG89856	Soybean	nucleus	51.52	51.76
CDY38540	Canola	nucleus	46.09	51.33
CDX82228	Canola	nucleus	44.18	51.2
CDY32390	Canola	nucleus	44.82	51.18
Bra000528.1-P	Field mustard	nucleus	46.57	51.14
VIT_13s0047g00250.t01	Wine grape	nucleus	50.08	50.97
CDX83250	Canola	nucleus	46.25	50.88
OQU90496	Sorghum	nucleus	47.37	50.0
CDY27563	Canola	nucleus	46.73	49.91
AT2G27050.1	Thale cress	nucleus	46.09	49.49
Bra001802.1-P	Field mustard	nucleus	45.77	49.4
KRH18696	Soybean	nucleus	48.64	49.35
Zm00001d022530_P001	Maize	nucleus	35.41	48.9
Zm00001d007188_P001	Maize	nucleus	46.09	48.57
AT3G20770.1	Thale cress	nucleus	47.53	47.45
Solyc01g096810.2.1	Tomato	nucleus	44.98	46.92
TraesCS2D01G099400.1	Wheat	nucleus	45.93	46.45
TraesCS2B01G116900.1	Wheat	nucleus	45.61	46.2
PGSC0003DMT400070751	Potato	nucleus	44.02	46.15
TraesCS2A01G099900.1	Wheat	nucleus	45.45	46.12
GSMUA_Achr10P...	Banana	nucleus	23.76	44.21
CDY19606	Canola	nucleus	30.94	42.17
CDY06379	Canola	nucleus	32.38	41.68
CDY60391	Canola	nucleus	27.43	40.47
Bra035746.1-P	Field mustard	nucleus	31.58	40.41
Bra023927.1-P	Field mustard	nucleus	28.55	40.41
GSMUA_AchrUn_...	Banana	nucleus	25.36	36.64
GSMUA_Achr7P21630_001	Banana	nucleus	37.8	36.18
GSMUA_Achr3P11160_001	Banana	nucleus	32.06	35.2
GSMUA_Achr8P17130_001	Banana	nucleus	30.62	35.1
GSMUA_Achr6P23310_001	Banana	nucleus	30.3	34.48
GSMUA_Achr9P27680_001	Banana	nucleus	33.17	34.1
GSMUA_Achr8P25580_001	Banana	nucleus	32.85	33.44

Protein Annotations

Gene3D:1.10.3180.10	MapMan:11.5.2.4	MapMan:15.5.11	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	GO:GO:0003674
GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G27670_001
EnsemblPlants:GSMUA_Achr5P27670_001	EnsemblPlants:GSMUA_Achr5T27670_001	InterPro:IPR023278	UniProt:M0T292	PFAM:PF04873	PANTHER:PTHR33305
PANTHER:PTHR33305:SF1	SUPFAM:SSF116768	UniParc:UPI000294B69D	SEG:seg	:	:

Description

Putative Protein ETHYLENE INSENSITIVE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27670_001]

Coordinates

chr5:+:28141683..28144124

Molecular Weight (calculated)

70244.7 Da

IEP (calculated)

5.044

GRAVY (calculated)

-0.702

Length

627 amino acids

Sequence
(BLAST)

001: MGMLLVQDMM YPGGPNYGQI FPYNDERNVS YGGFHQLSTG ECILGEGDLV DPPPDRFAEA ADEDSDEDVD IEELERRMWR DRMRHKRLKE QQQSKNKEQG
101: DAEKQCQSQE QARRKKMSRA QDGILKYMLK MMEVCKAQGF VYGIIPEKGK PVSGASDNLR GWWKEKVRFD RNGPAAVAKY QADNAIPGFD SDFNSGSVSP
201: HSLQELQDTT LGSLLSALMQ HCDPPQRRFP LEKGIPPPWW PTGREGWWPQ LGIPKEQGPP PYKKPHDLKK AWKVGVLTAV IKHISPDIEK IRRLVRQSKC
301: LQDKMTSKES ATWLAVIKQE EDMYMKMHPC ALAPPSAGSG VTGAISFNSS EYDVEGIDEA KNEDVTIYNL VADGNTLNLG ASSGNRMFGS ALMKEENDVE
401: FIQKRASSEC ELMMNQRTYT CDNVLCPHND FHSGFLDRNA RNSHQYICKY QNTLPPGSGM TSSSFQVPEN KPLAFPLQLN TESNHPSIGS RLNPVDISEL
501: GIPSDGQKSI DELMNFYDNS ISGSKNMNLE GVTMLEGSNS HQPRIQMENN FLGQGSGIAC NLFEEVGSLM EQSRYVQENT VPFEQELASG GFMTGSGFNI
601: SEMNYSDTLH RGIGDSSQKQ DGFNWFC

Best Arabidopsis Sequence Match ( AT3G20770.1 )
(BLAST)

001: MMFNEMGMCG NMDFFSSGSL GEVDFCPVPQ AEPDSIVEDD YTDDEIDVDE LERRMWRDKM RLKRLKEQDK GKEGVDAAKQ RQSQEQARRK KMSRAQDGIL
101: KYMLKMMEVC KAQGFVYGII PENGKPVTGA SDNLREWWKD KVRFDRNGPA AITKYQAENN IPGIHEGNNP IGPTPHTLQE LQDTTLGSLL SALMQHCDPP
201: QRRFPLEKGV PPPWWPNGKE DWWPQLGLPK DQGPAPYKKP HDLKKAWKVG VLTAVIKHMF PDIAKIRKLV RQSKCLQDKM TAKESATWLA IINQEESLAR
301: ELYPESCPPL SLSGGSCSLL MNDCSQYDVE GFEKESHYEV EELKPEKVMN SSNFGMVAKM HDFPVKEEVP AGNSEFMRKR KPNRDLNTIM DRTVFTCENL
401: GCAHSEISRG FLDRNSRDNH QLACPHRDSR LPYGAAPSRF HVNEVKPVVG FPQPRPVNSV AQPIDLTGIV PEDGQKMISE LMSMYDRNVQ SNQTSMVMEN
501: QSVSLLQPTV HNHQEHLQFP GNMVEGSFFE DLNIPNRANN NNSSNNQTFF QGNNNNNNVF KFDTADHNNF EAAHNNNNNS SGNRFQLVFD STPFDMASFD
601: YRDDMSMPGV VGTMDGMQQK QQDVSIWF

Arabidopsis Description

EIN3Protein ETHYLENE INSENSITIVE 3 [Source:UniProtKB/Swiss-Prot;Acc:O24606]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.