Factsheet for GSMUA_Achr4P30680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P11740_001
GSMUA_Achr2P11540_001
GSMUA_Achr3P09440_001
GSMUA_Achr5P27670_001
GSMUA_Achr6P15930_001
GSMUA_Achr6P35890_001
GSMUA_Achr8P21550_001
GSMUA_Achr9P17080_001
GSMUA_Achr9P17620_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	GSMUA_Achr10P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT2G27050.1	14675533
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT2G25490.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT2G25490.1	GSMUA_Achr1P11740_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr6P35890_001	AT3G28715.1	21798944
AT2G25490.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675532
AT5G25350.1	GSMUA_Achr10P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr11P...	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr2P11540_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr3P09440_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr5P27670_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr6P15930_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr8P21550_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17080_001	AT3G20770.1	14675533
AT5G25350.1	GSMUA_Achr9P17620_001	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05220_001	Banana	cytosol	80.21	79.97
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	78.53	78.29
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	78.22	76.35
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	75.0	73.2
PGSC0003DMT400007545	Potato	cytosol	53.99	55.26
VIT_11s0016g05410.t01	Wine grape	cytosol	56.13	55.2
Zm00001d015778_P001	Maize	cytosol	53.53	54.28
Solyc12g009560.1.1	Tomato	cytosol	52.91	54.16
Zm00001d053642_P001	Maize	cytosol	53.99	54.07
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	54.14	53.89
HORVU7Hr1G090240.1	Barley	cytosol	44.33	53.62
KRH20255	Soybean	cytosol	52.45	53.52
VIT_04s0008g05470.t01	Wine grape	cytosol	54.6	53.37
KRH03688	Soybean	cytosol	52.15	53.21
TraesCS6D01G169200.1	Wheat	cytosol	52.61	52.85
TraesCS6A01G181900.1	Wheat	cytosol	52.3	52.54
TraesCS6B01G210700.1	Wheat	cytosol	52.3	52.54
KRH61771	Soybean	cytosol	51.23	52.52
KRH52439	Soybean	cytosol, nucleus, peroxisome	51.07	52.19
HORVU6Hr1G038430.3	Barley	plastid	52.15	52.07
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	51.07	51.87
KRH15886	Soybean	cytosol	51.23	51.86
PGSC0003DMT400040977	Potato	nucleus	53.07	51.72
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	50.77	51.64
TraesCS7B01G278800.1	Wheat	cytosol	51.23	51.62
KRH05167	Soybean	cytosol	48.16	51.48
KRH62989	Soybean	cytosol	51.23	51.38
Solyc08g060810.2.1	Tomato	plastid	52.3	51.28
EER90022	Sorghum	cytosol, plastid	49.23	51.28
TraesCS7A01G377500.1	Wheat	cytosol	50.92	51.16
TraesCS7D01G373800.1	Wheat	cytosol	51.07	51.15
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	20.86	51.13
Os02t0200900-01	Rice	cytosol	51.38	50.76
AT5G25350.1	Thale cress	cytosol	48.16	50.4
Os06t0605900-01	Rice	cytosol	48.16	50.08
CDX87090	Canola	cytosol	47.09	49.84
Bra036542.1-P	Field mustard	cytosol	47.09	49.84
AT2G25490.1	Thale cress	plastid	47.85	49.68
CDY19807	Canola	cytosol	46.93	49.68
CDX88173	Canola	cytosol	46.78	49.04
Bra009835.1-P	Field mustard	cytosol	46.63	48.87
CDX80503	Canola	cytosol	46.47	48.79
CDX76980	Canola	cytosol	44.63	48.58
Bra034254.1-P	Field mustard	cytosol	45.71	47.91
CDY35358	Canola	cytosol	45.55	47.67
PGSC0003DMT400089433	Potato	mitochondrion	31.44	44.66
PGSC0003DMT400094835	Potato	cytosol	16.56	44.08
Zm00001d000408_P001	Maize	cytosol	49.54	43.47
Zm00001d036880_P003	Maize	cytosol	48.62	43.07
HORVU5Hr1G000950.4	Barley	plastid	29.45	42.95
HORVU5Hr1G029670.1	Barley	mitochondrion	33.74	42.88
PGSC0003DMT400042949	Potato	cytosol	36.2	42.75
KRH04870	Soybean	cytosol	17.64	42.28
Solyc06g049010.1.1	Tomato	plastid	40.03	42.1
Solyc06g030610.1.1	Tomato	cytosol	17.18	40.88
Solyc06g030620.1.1	Tomato	cytosol	12.42	40.3
GSMUA_Achr8P15580_001	Banana	cytosol	16.1	25.74
GSMUA_Achr8P13910_001	Banana	mitochondrion	13.5	24.86
GSMUA_Achr5P19410_001	Banana	cytosol	15.95	24.47
GSMUA_Achr9P11380_001	Banana	cytosol	16.56	24.11
GSMUA_Achr2P17760_001	Banana	cytosol	13.04	24.01
GSMUA_AchrUn_...	Banana	cytosol	13.34	23.64
GSMUA_Achr10P...	Banana	cytosol	12.58	23.1
GSMUA_Achr6P18620_001	Banana	cytosol	12.88	22.89
GSMUA_Achr8P28940_001	Banana	cytosol	13.19	22.63
GSMUA_Achr3P28280_001	Banana	plastid	16.87	22.31
GSMUA_Achr3P22880_001	Banana	cytosol	21.47	21.88
GSMUA_Achr11P...	Banana	cytosol	21.78	21.65
GSMUA_Achr2P05250_001	Banana	cytosol	15.95	21.4
GSMUA_Achr9P22570_001	Banana	plastid	14.26	21.14
GSMUA_Achr6P20450_001	Banana	cytosol	21.01	20.76
GSMUA_Achr7P22290_001	Banana	cytosol	22.7	20.67
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	21.63	19.75
GSMUA_Achr4P12920_001	Banana	plastid	15.34	19.57
GSMUA_Achr9P18840_001	Banana	plastid	15.49	13.84

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G30680_001	EnsemblPlants:GSMUA_Achr4P30680_001	EnsemblPlants:GSMUA_Achr4T30680_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0STI0
PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000296EBDC	SEG:seg	:	:	:

Description

Putative EIN3-binding F-box protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30680_001]

Coordinates

chr4:-:28167085..28170834

Molecular Weight (calculated)

70126.7 Da

IEP (calculated)

7.711

GRAVY (calculated)

0.161

Length

652 amino acids

Sequence
(BLAST)

001: MAALVNRRGN DDICPGGPLF SNLVDSSLLL SLTRNVDVYC PPRKRPRVTA PLIFRAGEKI ADEKLQRSID TLPEECLFEI LRRLPGDKER SNSACVSKRW
101: LMLLSSIRSS ELAQKKPSVE SVKKPVPDLN KDCALDEHES ENNGYLTRRL DAEEATDIRL ASIALGTYSR GGLGKLFIRG SNSTRLTDVG LSAIAHACPS
201: LHVLSMWKVP LITDAGLSEI ADGCPLLERL DLCRCPLISD KGLMAVAQKC PNLMSLTIDS CSSIGNEGLQ VIGRCCPKLK SVSIKDCLHV GDRGIASLVS
301: SASSSLERLK LHTLNISDIS LAVIGNYGKN VIELSLTGLQ NVGEKGFWVM GNTLGLQKLR SITITCCGKL TDRGLEAIAK GSPFLKHLSV HKCYYLSDDG
401: LKAFAETARA LESLHLEDCN RITLMGVTAL LACNSELKSL ALVRCLGLKD LAFSPTRLPS CVSLTSLTIR DCPGVTGASL QVVGRICSQL QKIDLSGQAG
501: VTDASLIQLI GSSEVGFVEV NLCGCVDLTD DLVTLLVKAH GSTLKMLNLN GCKKITDRSL LAVADSCSML DDLDLSCCSV SDYGVAVLAS ARQLNLHVLS
601: LSSCSKVTQK IVPFLGNLGK SMVGLNLQNC SLISTHGIVL LEEKLWWCDI IS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.