Factsheet for PGSC0003DMT400089433

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015145
PGSC0003DMT400015148
PGSC0003DMT400022477
PGSC0003DMT400063662
PGSC0003DMT400072522

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	PGSC0003DMT400015145	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400015148	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400022477	AT2G27050.1	14675533
AT2G25490.1	PGSC0003DMT400015145	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400015148	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400022477	AT3G20770.1	14675532
AT2G25490.1	PGSC0003DMT400015145	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400015148	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400022477	AT3G20770.1	14675533
AT2G25490.1	PGSC0003DMT400072522	AT3G28715.1	21798944
AT2G25490.1	PGSC0003DMT400063662	AT4G02570.1	14675533
AT5G25350.1	PGSC0003DMT400015145	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400015148	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400022477	AT3G20770.1	14675532
AT5G25350.1	PGSC0003DMT400015145	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400015148	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400022477	AT3G20770.1	14675533
AT5G25350.1	PGSC0003DMT400063662	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g030620.1.1	Tomato	cytosol	25.71	58.71
PGSC0003DMT400094835	Potato	cytosol	31.15	58.37
Solyc06g030610.1.1	Tomato	cytosol	34.64	58.03
PGSC0003DMT400042949	Potato	cytosol	64.92	53.99
PGSC0003DMT400040977	Potato	nucleus	59.7	40.96
KRH15886	Soybean	cytosol	54.25	38.66
PGSC0003DMT400007545	Potato	cytosol	50.76	36.58
KRH05167	Soybean	cytosol	48.58	36.56
KRH61771	Soybean	cytosol	50.33	36.32
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	50.76	36.29
VIT_04s0008g05470.t01	Wine grape	cytosol	52.72	36.28
KRH52439	Soybean	cytosol, nucleus, peroxisome	50.33	36.21
AT2G25490.1	Thale cress	plastid	47.71	34.87
CDX80503	Canola	cytosol	46.84	34.62
CDX88173	Canola	cytosol	46.62	34.41
Bra009835.1-P	Field mustard	cytosol	46.41	34.24
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	48.15	33.79
CDX87090	Canola	cytosol	45.32	33.77
AT5G25350.1	Thale cress	cytosol	45.75	33.71
CDY19807	Canola	cytosol	44.66	33.28
Bra036542.1-P	Field mustard	cytosol	44.66	33.28
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	47.71	32.78
GSMUA_Achr6P05220_001	Banana	cytosol	46.41	32.57
Bra034254.1-P	Field mustard	cytosol	44.01	32.48
CDY35358	Canola	cytosol	44.01	32.42
CDX76980	Canola	cytosol	42.27	32.39
GSMUA_Achr4P30680_001	Banana	cytosol	44.66	31.44
EER90022	Sorghum	cytosol, plastid	42.27	30.99
Zm00001d015778_P001	Maize	cytosol	42.7	30.48
TraesCS6A01G181900.1	Wheat	cytosol	42.05	29.74
Os02t0200900-01	Rice	cytosol	42.7	29.7
TraesCS6B01G210700.1	Wheat	cytosol	41.83	29.58
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	42.05	29.47
TraesCS6D01G169200.1	Wheat	cytosol	41.61	29.43
HORVU6Hr1G038430.3	Barley	plastid	41.83	29.4
HORVU7Hr1G090240.1	Barley	cytosol	34.42	29.31
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	42.48	29.19
Zm00001d053642_P001	Maize	cytosol	41.39	29.19
TraesCS7B01G278800.1	Wheat	cytosol	39.87	28.28
TraesCS7D01G373800.1	Wheat	cytosol	39.87	28.11
TraesCS7A01G377500.1	Wheat	cytosol	39.65	28.04
Os06t0605900-01	Rice	cytosol	36.17	26.48
Zm00001d036880_P003	Maize	cytosol	41.18	25.68
Zm00001d000408_P001	Maize	cytosol	40.96	25.3
HORVU5Hr1G029670.1	Barley	mitochondrion	24.62	22.03
HORVU5Hr1G000950.4	Barley	plastid	18.95	19.46
PGSC0003DMT400074998	Potato	cytosol	13.73	18.21
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	26.14	18.05
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	10.46	18.05
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	13.29	17.89
PGSC0003DMT400029999	Potato	cytosol	16.12	17.7
PGSC0003DMT400053176	Potato	cytosol	13.73	16.15
PGSC0003DMT400079115	Potato	cytosol	21.13	15.98
PGSC0003DMT400053918	Potato	cytosol	17.86	14.94
PGSC0003DMT400063732	Potato	cytosol	20.7	14.82
PGSC0003DMT400064250	Potato	mitochondrion	17.43	14.55
PGSC0003DMT400091765	Potato	cytosol	16.12	10.48
PGSC0003DMT400008648	Potato	cytosol	1.96	5.39

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1DI56	PFAM:PF00646	PFAM:PF13516	EnsemblPlantsGene:PGSC0003DMG400039004
PGSC:PGSC0003DMG400039004	EnsemblPlants:PGSC0003DMT400089433	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000295551F	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039004]

Coordinates

chr6:+:22554353..22555838

Molecular Weight (calculated)

49973.4 Da

IEP (calculated)

5.808

GRAVY (calculated)

0.162

Length

459 amino acids

Sequence
(BLAST)

001: MLLSRGQNWN VNFPSMERIC ATTASQNFEQ RKYPSIEILP DECLFEVFKR LPSGQERSVY ACVSKRWLML LSNIHKDEIA EYNGIEGEGY LVRSLFGKEA
101: TYVRLAAIAI GTANHGGLAK LSIQGNNPCL SVTDAGLVAI ARGCPTLRDL SLWNVSFVGD KGLSEIAHGC HLLEKLDLFK CPIITDKSLL DIAKNCPDMT
201: SLTIDSCSNI GNESLKAVGQ YCPNLSEPED FRIKEFSTHW GSWISSSILF SCCIDVEDYP LTLVASCRNS LVSLAIHNCP RVGNTTIDVV GGLCRKLTHI
301: DQSGLLRITD EGLIPLVQNC AANLVAVNLS RCVNITDISV STIVKLNGGS LKSLLVDGCR HVTDATLVEI LKSCRMLNVL DVSKSGITDS GSKTLANATQ
401: LHLQILSLSG CPFVSDNSLP FLLDLVQNLQ GLNIQHCLEI SSRTVDALVE INPICDILS

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.