Factsheet for PGSC0003DMT400091765

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078490.1.1	Tomato	cytosol	67.14	88.76
PGSC0003DMT400008648	Potato	cytosol	19.83	83.83
VIT_18s0001g09940.t01	Wine grape	plastid	50.14	65.43
KRH15408	Soybean	plastid	49.01	63.02
KRH05631	Soybean	plastid	48.58	60.92
AT1G47056.1	Thale cress	cytosol, plastid	43.91	59.85
Bra032213.1-P	Field mustard	plastid	43.48	59.73
CDY43846	Canola	plastid	43.48	59.73
CDY25663	Canola	plastid	42.92	58.95
PGSC0003DMT400064250	Potato	mitochondrion	43.34	55.64
PGSC0003DMT400053918	Potato	cytosol	42.35	54.46
AT4G07400.1	Thale cress	nucleus	42.35	53.97
GSMUA_Achr3P28280_001	Banana	plastid	36.69	52.54
GSMUA_Achr4P12920_001	Banana	plastid	36.4	50.29
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	30.74	49.21
Os04t0505700-01	Rice	cytosol, mitochondrion	28.9	49.16
GSMUA_Achr2P05250_001	Banana	cytosol	33.71	48.97
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	36.54	48.96
TraesCS5B01G158800.1	Wheat	plastid	36.54	48.96
TraesCS5A01G161400.1	Wheat	cytosol, plastid	36.54	48.96
GSMUA_Achr9P11380_001	Banana	cytosol	30.88	48.66
GSMUA_Achr8P15580_001	Banana	cytosol	28.05	48.53
OQU89081	Sorghum	cytosol	35.69	48.0
GSMUA_Achr9P22570_001	Banana	plastid	29.46	47.27
Zm00001d019677_P001	Maize	cytosol	34.99	47.05
KXG26667	Sorghum	plastid	31.16	47.01
HORVU5Hr1G050420.1	Barley	plastid	36.4	46.56
Zm00001d003103_P001	Maize	plastid	34.28	46.54
TraesCS2A01G359900.1	Wheat	cytosol	34.14	44.55
Zm00001d025812_P001	Maize	plastid	34.14	44.14
Zm00001d025808_P001	Maize	plastid	33.99	43.96
HORVU0Hr1G005070.1	Barley	plastid	33.71	42.65
GSMUA_Achr9P18840_001	Banana	plastid	34.28	33.15
PGSC0003DMT400053176	Potato	cytosol	11.19	20.26
PGSC0003DMT400029999	Potato	cytosol	11.9	20.1
PGSC0003DMT400074998	Potato	cytosol	9.49	19.36
PGSC0003DMT400007545	Potato	cytosol	17.28	19.15
PGSC0003DMT400079115	Potato	cytosol	16.29	18.95
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	8.78	18.18
PGSC0003DMT400063732	Potato	cytosol	16.15	17.78
PGSC0003DMT400040977	Potato	nucleus	16.43	17.34
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	15.44	16.98
PGSC0003DMT400094835	Potato	cytosol	5.81	16.73
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	15.44	16.39
PGSC0003DMT400089433	Potato	mitochondrion	10.48	16.12
PGSC0003DMT400042949	Potato	cytosol	12.32	15.76
Zm00001d037295_P001	Maize	mitochondrion	5.1	14.75
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	4.39	13.96
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	4.53	13.73

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.20.1280.50	MapMan:13.1.1.1.6	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1DNC8	PFAM:PF00134	PFAM:PF12937	PFAM:PF13516	EnsemblPlantsGene:PGSC0003DMG400041336
PGSC:PGSC0003DMG400041336	EnsemblPlants:PGSC0003DMT400091765	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF47954
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00029518CF	SEG:seg	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041336]

Coordinates

chr4:+:67778494..67784455

Molecular Weight (calculated)

77524.3 Da

IEP (calculated)

7.401

GRAVY (calculated)

0.057

Length

706 amino acids

Sequence
(BLAST)

001: MKEIDDSDDV IDVFEVGEFD YSSNIPDECL ACIFHFLSSG DRKSSSLVCR RWLRVEGQNR HRLSLNAQSE LVAVVPVIFS RFDSVTKLAL KCDRRSASIG
101: DEALVLISLR CRNLTRLKLR SCRELTDTGM ESFAKNCKGL KKLSCGSCAF GAKGMNAVLN NCSALEELSV KRLRGITDGA AAEPIGPGVA GGSLRVICLK
201: ELYNGQCFGP LIIGSKSLRT LKLFRCSGDW DKILEVIAEQ VSELVEIHLE RLQVSDTGLA AISKCSILEI LHLVKTPECT NNGLKTVAEN CKLLRKLHID
301: GWKTNRISDD GLIAVAKHCP NLQELVLIGV NPTCASLEKL ATNCLNLERL ALCGSETVGD PELSCIAAKC IALRKLCIKS CPVSDQGMEA LASGCPNLVK
401: VKVKKCRLVT SGSADWLRTT RGSVAVNLDT PEPENPDASA SDGGVAEVGN EIRQVAGQVR GAFQKTGSMH REGSRMKKEV CSCLRARLVE FLIQSAQDLQ
501: VSPIVKYSAL SLFTDRFYPA LTGEGTKDAK SWLLQPLRES NLQLFALVAI WISSKIHDSP SPSVKSFKSL ADITIKEQHF TTKDFLEAEL VLMQVLKFEI
601: GMLSIPFRFF EDLLTKFSEV ARVGKQLSLE ACMDIMDLIY EKGEISSFNC SSHHLAASIV VAAYAITVPL QKSEFPILVW VKFVTSCREE DIVDTVKNIL
701: MHVFEA

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.