Factsheet for Zm00001d025808_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025812_P001	Maize	plastid	98.53	98.53
KXG26667	Sorghum	plastid	78.02	91.03
Zm00001d003103_P001	Maize	plastid	85.53	89.81
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	66.48	82.31
TraesCS2A01G359900.1	Wheat	cytosol	76.56	77.26
HORVU0Hr1G005070.1	Barley	plastid	77.47	75.81
GSMUA_Achr8P15580_001	Banana	cytosol	41.03	54.9
GSMUA_Achr9P11380_001	Banana	cytosol	44.87	54.69
PGSC0003DMT400008648	Potato	cytosol	14.47	47.31
Solyc04g078490.1.1	Tomato	cytosol	45.24	46.25
VIT_18s0001g09940.t01	Wine grape	plastid	45.79	46.21
Bra032213.1-P	Field mustard	plastid	42.67	45.33
CDY43846	Canola	plastid	42.67	45.33
KRH15408	Soybean	plastid	45.42	45.17
CDY25663	Canola	plastid	42.49	45.14
Zm00001d019677_P001	Maize	cytosol	42.86	44.57
KRH28425	Soybean	cytosol	42.31	43.92
AT1G47056.1	Thale cress	cytosol, plastid	41.39	43.63
KRH77049	Soybean	cytosol	41.39	43.3
CDX81326	Canola	cytosol	41.39	43.13
CDX83114	Canola	cytosol	39.01	42.86
KRH05631	Soybean	plastid	44.14	42.81
AT5G67250.1	Thale cress	cytosol	41.21	42.69
CDY18646	Canola	cytosol	40.84	42.56
CDX68575	Canola	cytosol	39.74	42.47
Bra037120.1-P	Field mustard	cytosol	40.84	42.4
VIT_07s0129g01110.t01	Wine grape	plastid	43.59	42.27
Bra029994.1-P	Field mustard	cytosol	39.56	42.27
PGSC0003DMT400053918	Potato	cytosol	42.49	42.26
Solyc02g092990.1.1	Tomato	plastid	42.49	42.18
KRH04530	Soybean	cytosol	41.58	42.12
Solyc03g044220.1.1	Tomato	cytosol	41.94	41.71
PGSC0003DMT400064250	Potato	mitochondrion	41.76	41.45
KRH57971	Soybean	cytosol	42.31	41.32
AT4G07400.1	Thale cress	nucleus	41.76	41.16
AT3G50080.1	Thale cress	cytosol	39.01	40.8
KRH52037	Soybean	cytosol	28.02	37.87
PGSC0003DMT400091765	Potato	cytosol	43.96	33.99
CDY01426	Canola	cytosol	42.67	21.51
CDY12824	Canola	nucleus	42.49	21.28
Zm00001d038224_P004	Maize	cytosol	13.37	19.84
KRH61346	Soybean	cytosol	25.27	19.77
Zm00001d051219_P001	Maize	cytosol	14.84	19.42
Zm00001d015974_P002	Maize	cytosol	12.09	18.44
Zm00001d000224_P001	Maize	cytosol	13.92	17.55
Zm00001d007640_P001	Maize	cytosol	19.96	17.36
Zm00001d015778_P001	Maize	cytosol	19.96	16.95
Zm00001d053642_P001	Maize	cytosol	19.96	16.74
Zm00001d037295_P001	Maize	mitochondrion	7.33	16.39
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	6.23	15.32
Zm00001d044622_P002	Maize	mitochondrion	19.41	15.06
Zm00001d036880_P003	Maize	cytosol	19.6	14.54
Zm00001d000408_P001	Maize	cytosol	19.78	14.54
Zm00001d007294_P001	Maize	cytosol	10.62	14.29
Zm00001d005072_P003	Maize	mitochondrion	18.86	14.21
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	6.04	14.16
Zm00001d023825_P001	Maize	cytosol	17.03	14.09
Zm00001d048695_P001	Maize	cytosol	16.67	14.04
Zm00001d041635_P002	Maize	cytosol	16.85	13.88

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:103641829	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	ProteinID:AQK44657.1	ProteinID:AQK44658.1
EMBL:BT064062	EMBL:BT085290	UniProt:C0P6Z3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF12937	PANTHER:PTHR44356	PANTHER:PTHR44356:SF4	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0001949063	EnsemblPlantsGene:Zm00001d025808	EnsemblPlants:Zm00001d025808_P001	EnsemblPlants:Zm00001d025808_T001	SEG:seg	:

Description

F-box protein

Coordinates

chr10:-:130145464..130148492

Molecular Weight (calculated)

57985.4 Da

IEP (calculated)

8.498

GRAVY (calculated)

0.079

Length

546 amino acids

Sequence
(BLAST)

001: MGHSPSSLSK SGPSSPPRRS RSFSPMAPPQ QLLLTAPLQV AAGGSGSDSS SSFAPPARDY TQDLPDEILA LVFASLSPTD RNACSLICSR WMEVDATTRH
101: RLSLDARAAL GNAATALFSR FTAVTKLALR CARDSGSDSL SDHGAAALAA ALPSERLARL KLRGLRQLSD AGLASLAAGA PAIRKLSIAS CTFGPRAFVA
201: VLQSCPLLED LSVKRLRSVA DTSGAASSIA EEIKFPPALS LRSVCVKDLY NALCFVPLVA SSPNLRSLKI LRCSGAWDLP LEVIAARAPG LVELHLEKLQ
301: VGDRGLAALS ACANLEVLFL VKTPECTDSG IISVAEKCHK LRKLHVDGWR TNRIGDFGLM AVARGCPDLQ ELVLIGVNPT VLSLRMLGEH CRLLERLALC
401: GCETVGDAEI ICLAERWAAL KKLCIKGCPV SDRGMEALNG GCPSLVKVKL KRCRGVSYEC IENLKVTRGE SFSISLDVVL EHDAGSTSEN GAQENGQTQI
501: TELAGQMTGM DLLTNAAGTQ SSIHTINRMR SVMSAIRRRF GNPLPP

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.