Factsheet for Zm00001d038224_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18256	Sorghum	cytosol, nucleus, plastid	96.47	96.21
Os05t0425700-01	Rice	cytosol	85.33	83.51
TraesCS1A01G264900.1	Wheat	cytosol	82.07	81.62
TraesCS1D01G265100.1	Wheat	cytosol	82.07	81.62
TraesCS1B01G275600.1	Wheat	cytosol	82.34	79.95
HORVU1Hr1G065030.2	Barley	cytosol	82.34	79.95
GSMUA_Achr10P...	Banana	cytosol	70.65	73.24
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	65.49	70.67
KRH64574	Soybean	cytosol	59.51	68.22
CDX88336	Canola	cytosol	60.05	68.21
Solyc04g063380.2.1	Tomato	cytosol	67.12	67.86
GSMUA_Achr6P18620_001	Banana	cytosol	67.39	67.57
Zm00001d000224_P001	Maize	cytosol	79.35	67.44
AT1G21410.1	Thale cress	cytosol	65.22	66.67
Bra016422.1-P	Field mustard	cytosol	63.86	66.57
CDX87549	Canola	cytosol	64.13	66.48
GSMUA_AchrUn_...	Banana	cytosol	66.3	66.3
Bra015699.1-P	Field mustard	cytosol	63.59	66.1
CDY67973	Canola	plasma membrane	64.13	65.19
CDX96592	Canola	cytosol	64.13	65.19
CDX79184	Canola	cytosol	62.23	63.79
Bra003692.1-P	Field mustard	cytosol	61.96	63.51
CDX68067	Canola	cytosol	61.68	63.23
KRH53355	Soybean	cytosol	63.86	63.17
AT1G77000.1	Thale cress	cytosol	61.41	62.78
CDY58589	Canola	extracellular	22.01	61.83
KRH15905	Soybean	cytosol	62.23	61.73
KRH18090	Soybean	cytosol	62.77	61.6
CDY58588	Canola	extracellular	21.47	59.85
VIT_18s0001g15010.t01	Wine grape	mitochondrion	69.29	59.58
Zm00001d051219_P001	Maize	cytosol	21.47	18.94
Zm00001d015974_P002	Maize	cytosol	15.49	15.92
Zm00001d007640_P001	Maize	cytosol	23.91	14.01
Zm00001d007294_P001	Maize	cytosol	15.22	13.79
Zm00001d025812_P001	Maize	plastid	19.84	13.37
Zm00001d025808_P001	Maize	plastid	19.84	13.37
Zm00001d048695_P001	Maize	cytosol	23.1	13.12
Zm00001d003103_P001	Maize	plastid	18.48	13.08
Zm00001d019677_P001	Maize	cytosol	18.48	12.95
Zm00001d015778_P001	Maize	cytosol	22.28	12.75
Zm00001d023825_P001	Maize	cytosol	22.55	12.58
Zm00001d041635_P002	Maize	cytosol	22.28	12.37
Zm00001d053642_P001	Maize	cytosol	21.47	12.14
Zm00001d036880_P003	Maize	cytosol	23.37	11.68
Zm00001d044622_P002	Maize	mitochondrion	22.01	11.51
Zm00001d037295_P001	Maize	mitochondrion	7.61	11.48
Zm00001d005072_P003	Maize	mitochondrion	21.47	10.9
Zm00001d000408_P001	Maize	cytosol	21.74	10.77
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	6.25	10.36
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.98	9.44

Protein Annotations

EntrezGene:100274363	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	ProteinID:AQK86076.1	ProteinID:AQK86077.1	ProteinID:AQK86078.1
UniProt:B4F7T2	EMBL:BT033170	EMBL:BT034435	EMBL:BT040454	EMBL:BT042858	InterPro:F-box-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:HM807482	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF2
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00017B5FC7	EnsemblPlantsGene:Zm00001d038224	EnsemblPlants:Zm00001d038224_P004
EnsemblPlants:Zm00001d038224_T004	SEG:seg	:	:	:	:

Description

F-box protein SKP2A

Coordinates

chr6:+:151976171..151979800

Molecular Weight (calculated)

39830.2 Da

IEP (calculated)

8.133

GRAVY (calculated)

0.065

Length

368 amino acids

Sequence
(BLAST)

001: MVSGRPHGEL DSWFKSLMVT SSSERGQAGS GGPAPTLTGW KDLPMELLVR IISTVGDDRM VIVASGVCTG WRDALGWGVT NLSLTWCKLS MNNLMISLAH
101: KFTKLQVLTL RQNKPQLEDS AVEAVANYCH DLRELDLSRS FRLSDRSLYA LAHGCPRLTR LNISGCSSFS DTALIYLTCR CKNLKCLNLC GCVKAVTDRA
201: LQAIAQNCGQ LQSLNLGWCD DVTDKGVTSL ASGCPDLRAV DLCGCVLITD ESVVALANGC PHLRSLGLYF CQNITDRAMY SLANSRVKSK RGRWDAVKDG
301: LANLNISQCT ALTPPAVQAV CDSFPALHTC PERHSLIISG CLSLTSVHCA CALHPHRAGR ALMANHAY

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.