CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53355	Soybean	cytosol	98.13	84.68
CDX88336	Canola	cytosol	77.57	76.85
KRH15905	Soybean	cytosol	87.54	75.74
KRH18090	Soybean	cytosol	87.54	74.93
Bra015699.1-P	Field mustard	cytosol	76.95	69.77
CDX87549	Canola	cytosol	76.95	69.58
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	73.21	68.92
CDX79184	Canola	cytosol	76.64	68.52
AT1G21410.1	Thale cress	cytosol	76.64	68.33
Bra003692.1-P	Field mustard	cytosol	76.01	67.97
CDX68067	Canola	cytosol	76.01	67.97
Bra016422.1-P	Field mustard	cytosol	74.45	67.71
AT1G77000.1	Thale cress	cytosol	75.7	67.5
CDY58589	Canola	extracellular	27.1	66.41
CDX96592	Canola	cytosol	74.45	66.02
CDY67973	Canola	plasma membrane	73.52	65.19
CDY58588	Canola	extracellular	26.48	64.39
Solyc04g063380.2.1	Tomato	cytosol	72.9	64.29
GSMUA_Achr10P...	Banana	cytosol	68.22	61.69
Zm00001d038224_P004	Maize	cytosol	68.22	59.51
EES18256	Sorghum	cytosol, nucleus, plastid	68.22	59.35
GSMUA_AchrUn_...	Banana	cytosol	67.91	59.24
GSMUA_Achr6P18620_001	Banana	cytosol	66.36	58.04
Os05t0425700-01	Rice	cytosol	67.6	57.71
TraesCS3A01G407700.1	Wheat	cytosol	67.91	57.37
TraesCS3D01G402900.2	Wheat	cytosol	67.91	57.37
TraesCS3B01G440600.2	Wheat	cytosol	67.91	57.22
TraesCS1A01G264900.1	Wheat	cytosol	65.73	57.03
Os01t0881900-01	Rice	cytosol	67.29	56.99
TraesCS1D01G265100.1	Wheat	cytosol	65.42	56.76
HORVU1Hr1G065030.2	Barley	cytosol	66.98	56.73
EES03986	Sorghum	cytosol	67.29	56.69
TraesCS1B01G275600.1	Wheat	cytosol	66.67	56.46
VIT_18s0001g15010.t01	Wine grape	mitochondrion	73.83	55.37
HORVU3Hr1G091200.4	Barley	cytosol	67.29	51.43
Zm00001d000224_P001	Maize	cytosol	67.29	49.88
KRG90608	Soybean	cytosol	23.99	18.42
KRH36149	Soybean	cytosol	23.68	18.14
KRH16153	Soybean	cytosol	12.77	16.53
KRH50979	Soybean	cytosol	17.76	16.24
KRH38032	Soybean	cytosol	17.76	15.08
KRH52037	Soybean	cytosol	18.07	14.36
KRH02152	Soybean	cytosol	24.92	13.7
KRH72766	Soybean	cytosol	22.43	13.38
KRH11333	Soybean	cytosol	15.89	13.04
KRH05167	Soybean	cytosol	24.61	12.95
KRH20947	Soybean	cytosol, nucleus, peroxisome	24.3	12.85
KRH03688	Soybean	cytosol	25.55	12.83
KRG96764	Soybean	cytosol	25.23	12.64
KRH68483	Soybean	cytosol	25.23	12.64
KRH47976	Soybean	cytosol	15.26	12.63
KRH15886	Soybean	cytosol	25.23	12.58
KRH20255	Soybean	cytosol	24.92	12.52
KRH61771	Soybean	cytosol	24.61	12.42
KRH52439	Soybean	cytosol, nucleus, peroxisome	24.3	12.23
KRH76059	Soybean	cytosol, nucleus, peroxisome	25.55	12.22
KRH65525	Soybean	cytosol, peroxisome, plastid	26.79	12.15
KRH62989	Soybean	cytosol	24.3	12.0
KRH17127	Soybean	cytosol	23.68	11.66
KRH77049	Soybean	cytosol	18.69	11.49
KRH28425	Soybean	cytosol	18.69	11.41
KRH04530	Soybean	cytosol	17.45	10.39
KRH15408	Soybean	plastid	17.76	10.38
KRH57971	Soybean	cytosol	17.76	10.2
KRH05631	Soybean	plastid	17.76	10.12
KRH04870	Soybean	cytosol	8.41	9.93
KRH61346	Soybean	cytosol	16.51	7.59

Protein Annotations

EntrezGene:100818928	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EMBL:ACUP02002769	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_04G242700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JYY9	InterPro:IPR001611	InterPro:IPR001810
InterPro:IPR032675	EnsemblPlants:KRH64574	ProteinID:KRH64574	ProteinID:KRH64574.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI00023C0A1C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:51064446..51067082

Molecular Weight (calculated)

35027.4 Da

IEP (calculated)

7.876

GRAVY (calculated)

0.146

Length

321 amino acids

Sequence
(BLAST)

001: MQILSLVDDQ TVITASGVCR GWRDAIYFGL ARLSLSWCSK SMNNLVLSLV PKFVKLQTLI LRQDKPQLED NAVETIAKCC HELQILDLSK SFKLTDHSLY
101: ELALGCRDLT KLNISGCSAF SDNALAYLAS FCRKLKVLNL CGCVRAASDT ALQAIGQYCN QLQSLNLGWC DNVGDVGVTT LAYGCPDLRI VDLCGCVRIT
201: DDSVIALATR CPHLRSLGLY YCKNITDRAM YSLAHSKVNN RMWGSVKGGN DEDGLRTLNI SQCTALTPSA VQAVCDSFPS LHTCSGRHSL IMSGCLNLTS
301: VHCACAVHAH RAFTTFPHPA H

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.