Factsheet for Bra016422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96592	Canola	cytosol	99.72	97.24
AT1G21410.1	Thale cress	cytosol	92.07	90.28
Bra015699.1-P	Field mustard	cytosol	84.99	84.75
Bra003692.1-P	Field mustard	cytosol	84.7	83.29
KRH64574	Soybean	cytosol	67.71	74.45
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	71.67	74.19
Solyc04g063380.2.1	Tomato	cytosol	71.95	69.78
KRH15905	Soybean	cytosol	71.67	68.19
KRH53355	Soybean	cytosol	71.67	68.01
KRH18090	Soybean	cytosol	71.67	67.47
GSMUA_Achr10P...	Banana	cytosol	64.87	64.51
Zm00001d038224_P004	Maize	cytosol	66.57	63.86
GSMUA_Achr6P18620_001	Banana	cytosol	64.87	62.4
EES18256	Sorghum	cytosol, nucleus, plastid	65.16	62.33
Os01t0881900-01	Rice	cytosol	66.57	62.01
GSMUA_AchrUn_...	Banana	cytosol	64.02	61.41
Os05t0425700-01	Rice	cytosol	65.16	61.17
TraesCS1D01G265100.1	Wheat	cytosol	64.02	61.08
TraesCS1A01G264900.1	Wheat	cytosol	64.02	61.08
HORVU1Hr1G065030.2	Barley	cytosol	65.44	60.95
TraesCS3D01G402900.2	Wheat	cytosol	65.44	60.79
TraesCS3A01G407700.1	Wheat	cytosol	65.16	60.53
VIT_18s0001g15010.t01	Wine grape	mitochondrion	73.37	60.51
TraesCS1B01G275600.1	Wheat	cytosol	64.59	60.16
TraesCS3B01G440600.2	Wheat	cytosol	64.87	60.1
EES03986	Sorghum	cytosol	64.31	59.58
HORVU3Hr1G091200.4	Barley	cytosol	64.87	54.52
Zm00001d000224_P001	Maize	cytosol	64.87	52.89
Bra009671.1-P	Field mustard	cytosol	21.25	18.52
Bra029367.1-P	Field mustard	cytosol	19.83	17.03
Bra007401.1-P	Field mustard	cytosol	10.76	15.45
Bra036542.1-P	Field mustard	cytosol	24.08	13.8
Bra029656.1-P	Field mustard	cytosol	15.01	13.42
Bra009835.1-P	Field mustard	cytosol	23.23	13.18
Bra012785.1-P	Field mustard	cytosol	22.66	12.74
Bra005669.1-P	Field mustard	cytosol	24.08	12.72
Bra034254.1-P	Field mustard	cytosol	22.38	12.7
Bra036607.1-P	Field mustard	cytosol	20.96	11.58
Bra032213.1-P	Field mustard	plastid	16.43	11.28
Bra009931.1-P	Field mustard	cytosol	20.4	11.25
Bra037120.1-P	Field mustard	cytosol	16.43	11.03
Bra029994.1-P	Field mustard	cytosol	15.3	10.57

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra016422	EnsemblPlants:Bra016422.1	EnsemblPlants:Bra016422.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009719
GO:GO:0009791	GO:GO:0009987	GO:GO:0010311	GO:GO:0016567	GO:GO:0016740	GO:GO:0019005
GO:GO:0019538	GO:GO:0031146	GO:GO:0051781	GO:GO:0071365	InterPro:IPR001611	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4DIU5	PFAM:PF00646
PFAM:PF13516	PANTHER:PTHR44673	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002546974

Description

AT1G21410 (E=6e-188) SKP2A | SKP2A

Coordinates

chrA08:-:18392437..18394300

Molecular Weight (calculated)

38871.3 Da

IEP (calculated)

7.458

GRAVY (calculated)

0.038

Length

353 amino acids

Sequence
(BLAST)

001: MELDQCFQMM MMKMEGVSIK EWKDIPVELL MRILSLVDDR NVIAASGVCC GWRDAISLGL TRLRLSWCNN NMNSLVLSLA PKFVKLQTLI LRQDKPQLED
101: NAVEAIANHC HELQELDLSK SLKLTDRSLY ALAHGCPNLT KLNLSGCTSF SDKAIAYLTR SCRNLKVLNL CGCVNAVSDY TLEAIGNNCN QMQSLNLGWC
201: EKISDDGVMS LAYGCPDLRT LDLCGCVLIT DESVVALADW CVHLRSLGLY YCRNITDRAM YSLAQSGVKN KPGGQWKSSA KKSKFDEEGL RSLNISQCTA
301: LTPSAVQAVC DTFPALHTCS GRHSLVMSGC LNLTSVHCAC ILQAHRAVPH SAH

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.