Factsheet for Bra029994.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83114	Canola	cytosol	96.09	98.79
AT3G50080.1	Thale cress	cytosol	78.47	76.82
Bra037120.1-P	Field mustard	cytosol	71.23	69.2
KRH28425	Soybean	cytosol	55.38	53.8
KRH77049	Soybean	cytosol	54.79	53.64
Solyc02g092990.1.1	Tomato	plastid	56.56	52.55
PGSC0003DMT400064250	Potato	mitochondrion	56.56	52.55
VIT_07s0129g01110.t01	Wine grape	plastid	56.16	50.98
PGSC0003DMT400053918	Potato	cytosol	54.4	50.64
KRH04530	Soybean	cytosol	53.23	50.46
Solyc03g044220.1.1	Tomato	cytosol	54.21	50.46
KRH57971	Soybean	cytosol	53.62	49.02
Bra032213.1-P	Field mustard	plastid	48.73	48.44
GSMUA_Achr3P28280_001	Banana	plastid	46.18	47.87
GSMUA_Achr9P11380_001	Banana	cytosol	41.49	47.32
GSMUA_Achr8P15580_001	Banana	cytosol	36.79	46.08
OQU89081	Sorghum	cytosol	46.38	45.14
GSMUA_Achr2P05250_001	Banana	cytosol	42.47	44.65
Zm00001d019677_P001	Maize	cytosol	45.6	44.38
TraesCS5A01G161400.1	Wheat	cytosol, plastid	45.4	44.02
GSMUA_Achr4P12920_001	Banana	plastid	43.84	43.84
TraesCS5B01G158800.1	Wheat	plastid	45.21	43.83
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	45.01	43.64
GSMUA_Achr9P22570_001	Banana	plastid	37.57	43.64
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	37.18	43.08
Os04t0505700-01	Rice	cytosol, mitochondrion	34.05	41.93
Zm00001d003103_P001	Maize	plastid	42.07	41.35
HORVU5Hr1G050420.1	Barley	plastid	44.62	41.3
KXG26667	Sorghum	plastid	37.77	41.24
TraesCS2A01G359900.1	Wheat	cytosol	42.47	40.11
Zm00001d025808_P001	Maize	plastid	42.27	39.56
Zm00001d025812_P001	Maize	plastid	42.27	39.56
HORVU0Hr1G005070.1	Barley	plastid	41.88	38.35
GSMUA_Achr9P18840_001	Banana	plastid	46.18	32.33
Bra009671.1-P	Field mustard	cytosol	17.81	22.47
Bra029367.1-P	Field mustard	cytosol	17.81	22.14
Bra007401.1-P	Field mustard	cytosol	9.39	19.51
Bra009835.1-P	Field mustard	cytosol	22.7	18.65
Bra029656.1-P	Field mustard	cytosol	13.89	17.97
Bra012785.1-P	Field mustard	cytosol	21.53	17.52
Bra036542.1-P	Field mustard	cytosol	20.94	17.37
Bra034254.1-P	Field mustard	cytosol	21.14	17.36
Bra003692.1-P	Field mustard	cytosol	11.74	16.71
Bra009931.1-P	Field mustard	cytosol	20.74	16.56
Bra036607.1-P	Field mustard	cytosol	20.55	16.43
Bra015699.1-P	Field mustard	cytosol	11.35	16.38
Bra005669.1-P	Field mustard	cytosol	20.16	15.42
Bra016422.1-P	Field mustard	cytosol	10.57	15.3
Zm00001d037295_P001	Maize	mitochondrion	6.07	12.7
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.48	12.61
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.48	12.02

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra029994	EnsemblPlants:Bra029994.1	EnsemblPlants:Bra029994.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4EMH4	PFAM:PF00646	PFAM:PF13516
PANTHER:PTHR44356	PANTHER:PTHR44356:SF3	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002544511
SEG:seg	:	:	:	:	:

Description

AT3G50080 (E=2e-200) VFB2 | VFB2 (VIER F-BOX PROTEINE 2); ubiquitin-protein ligase

Coordinates

chrA01:+:15561954..15563489

Molecular Weight (calculated)

55949.3 Da

IEP (calculated)

8.499

GRAVY (calculated)

0.002

Length

511 amino acids

Sequence
(BLAST)

001: MGQAPSSPAD STTRDSALWL WPPEFVDCDF TADLPDDCLA HIFQFLTAGD RKRCSLVSKR WLLVDGQNRH RLSLAAKAEI LPFLPSIFSR FDSVTKLALR
101: CDRNSFSLSD EAFAMVSVRC SNLTRVKLRG CREITDLGME SFARNCKSLK KLSCGSCDFG ARGLNAVLEH CKVLEELSVK RIRGIHETAE PVKLHSSSSL
201: RSICLKELVN GQVFESLVAS TTLKKLRIIR CLGNWDKVLQ VNNGDGNTSL TEIHLERLQV SDFGLSAISK CRKLETLHIV KTPECSNSGL VCVVERCRLL
301: RKLHIDGWRT KRIGDEGLMA LAKHCLLLQE LVLIGVDATH ASLSAIASNC KKLERLALCG SGAIGDVEMA CIAEKCVALR KFCIKGCPIT DVGIKALALG
401: CPNLVKLKVK KCIVVTGDVR DWLRERRRTL VVSMDGDETK GTVMVSEDGG RGLETVVEEV LTPVADGGGD AEVEGGGGRL AMLKTKLLAS KNFVAFTLRR
501: WLQSEATSSS T

Best Arabidopsis Sequence Match ( AT3G50080.1 )
(BLAST)

001: MGQAPSSPAE PNVRDTSLCL WSPEFLDCES IGFEDGDYDF TANLPDDCLA HIFQFLSAGD RKRCSLVSKR WLLVDGQNRH RLSLDAKSEI LPFLPCIFNR
101: FDSVTKLALR CDRRSFSLSD EALFIVSIRC SNLIRVKLRG CREITDLGME SFARNCKSLR KLSCGSCTFG AKGINAMLEH CKVLEELSLK RIRGLHELAE
201: PIKLSLSASL RSVFLKELVN GQVFGSLVAT RTLKKVKIIR CLGNWDRVFE MNGNGNSSLT EIRLERLQVT DIGLFGISKC SNLETLHIVK TPDCSNLGLA
301: SVVERCKLLR KLHIDGWRVK RIGDQGLMSV AKHCLNLQEL VLIGVDATYM SLSAIASNCK KLERLALCGS GTIGDAEIGC IAEKCVTLRK FCIKGCLISD
401: VGVQALALGC PKLVKLKVKK CSLVTGEVRE WLRERRMTLV VSMDDDETNG VGLVDGGDQR VLETVVEEEA PPVIDGDGGL GVAGGGRLGL AILKTKLGLL
501: AGRNLVACTL RRWSQSEATS SI

Arabidopsis Description

FBL16F-box/LRR-repeat protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.