Factsheet for GSMUA_Achr9P22570_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28280_001	Banana	plastid	77.27	68.97
GSMUA_Achr4P12920_001	Banana	plastid	72.73	62.62
GSMUA_Achr2P05250_001	Banana	cytosol	54.09	48.97
GSMUA_Achr9P11380_001	Banana	cytosol	47.73	46.88
VIT_18s0001g09940.t01	Wine grape	plastid	56.36	45.84
KRH15408	Soybean	plastid	56.59	45.36
GSMUA_Achr8P15580_001	Banana	cytosol	41.82	45.1
Solyc04g078490.1.1	Tomato	cytosol	52.73	43.45
KRH05631	Soybean	plastid	55.23	43.16
CDY43846	Canola	plastid	48.64	41.63
Bra032213.1-P	Field mustard	plastid	48.64	41.63
AT1G47056.1	Thale cress	cytosol, plastid	48.64	41.31
CDY25663	Canola	plastid	48.18	41.25
AT5G67250.1	Thale cress	cytosol	48.41	40.42
Solyc02g092990.1.1	Tomato	plastid	50.0	40.0
PGSC0003DMT400064250	Potato	mitochondrion	49.77	39.82
Solyc03g044220.1.1	Tomato	cytosol	49.55	39.71
CDX81326	Canola	cytosol	47.27	39.69
PGSC0003DMT400053918	Potato	cytosol	49.09	39.34
KRH28425	Soybean	cytosol	46.82	39.16
CDY18646	Canola	cytosol	46.59	39.12
Bra037120.1-P	Field mustard	cytosol	46.36	38.78
VIT_07s0129g01110.t01	Wine grape	plastid	49.32	38.54
KRH77049	Soybean	cytosol	45.68	38.51
Bra029994.1-P	Field mustard	cytosol	43.64	37.57
AT4G07400.1	Thale cress	nucleus	47.05	37.36
KRH04530	Soybean	cytosol	45.45	37.11
CDX83114	Canola	cytosol	41.82	37.02
CDX68575	Canola	cytosol	42.95	36.99
AT3G50080.1	Thale cress	cytosol	43.86	36.97
KRH57971	Soybean	cytosol	46.14	36.31
GSMUA_Achr9P18840_001	Banana	plastid	55.0	33.15
KRH52037	Soybean	cytosol	27.5	29.95
PGSC0003DMT400091765	Potato	cytosol	47.27	29.46
PGSC0003DMT400008648	Potato	cytosol	10.45	27.54
CDY01426	Canola	cytosol	47.5	19.3
CDY12824	Canola	nucleus	47.05	18.99
KRH61346	Soybean	cytosol	24.77	15.62
GSMUA_Achr2P17760_001	Banana	cytosol	12.27	15.25
GSMUA_Achr4P30680_001	Banana	cytosol	21.14	14.26
GSMUA_AchrUn_...	Banana	cytosol	11.82	14.13
GSMUA_Achr5P19410_001	Banana	cytosol	13.64	14.12
GSMUA_Achr10P...	Banana	cytosol	11.36	14.08
GSMUA_Achr8P28940_001	Banana	cytosol	11.82	13.68
GSMUA_Achr6P05220_001	Banana	cytosol	20.23	13.61
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	20.23	13.61
GSMUA_Achr6P18620_001	Banana	cytosol	11.14	13.35
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	19.77	13.02
GSMUA_Achr8P13910_001	Banana	mitochondrion	10.23	12.71
GSMUA_Achr7P22290_001	Banana	cytosol	20.45	12.57
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	18.86	12.43
GSMUA_Achr3P22880_001	Banana	cytosol	17.95	12.34
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	19.55	12.04
GSMUA_Achr6P20450_001	Banana	cytosol	17.73	11.82
GSMUA_Achr11P...	Banana	cytosol	17.05	11.43

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G22570_001	EnsemblPlants:GSMUA_Achr9P22570_001	EnsemblPlants:GSMUA_Achr9T22570_001	InterPro:IPR001611	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0U2L6	PFAM:PF00646
PFAM:PF13516	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI000296098E	SEG:seg	:	:	:	:

Description

Putative F-box protein At1g47056 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22570_001]

Coordinates

chr9:-:27687434..27689065

Molecular Weight (calculated)

46759.0 Da

IEP (calculated)

8.986

GRAVY (calculated)

0.022

Length

440 amino acids

Sequence
(BLAST)

001: MGQSASTPSA RPLLSSSYSR RAKPPHSFAS SSGASANRQP VAMTEGDATS PIGGASPARD HTSDLPDECL ALVFQFLGAG DRKRCSLVCR RWLAAIALIA
101: VRCPNLTRLK LRACRAVTDA GMASVAKHCP GLRKLSVGSC TFGSSGIEAI VRGCALLEEL SIKRLRGLPD TFATEGAVVG AASLRSMCLK ELYNGQCLAP
201: LIAGSPNIKT LRLIRCTGDW DRLLKDIADK VTGIIEVHLE KLQMLGLPPL PNVCSNLQEL VLIGVNPTAR SLGLIASNCR NLERLALCSS DTFGDAEITC
301: IASKCMSLKK LCIKGCPVSD QGMEALAEGC PKLVKVKVKK CRGVTPGCAD WLMARRVGML AVNLDVIGPT EQQEASLSES RILENNEQLI DQIGAVDLLP
401: SSSNSRLPSW KTRIGFSTGG NLVVSALRRW SRGSSNSNST

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.