Factsheet for AT5G67250.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81326	Canola	cytosol	85.77	86.26
Bra037120.1-P	Field mustard	cytosol	85.58	85.74
CDY18646	Canola	cytosol	85.2	85.69
AT3G50080.1	Thale cress	cytosol	71.16	71.84
KRH77049	Soybean	cytosol	57.31	57.85
KRH28425	Soybean	cytosol	57.31	57.41
KRH04530	Soybean	cytosol	55.79	54.55
Solyc02g092990.1.1	Tomato	plastid	56.55	54.18
PGSC0003DMT400053918	Potato	cytosol	56.17	53.92
KRH57971	Soybean	cytosol	56.93	53.67
PGSC0003DMT400064250	Potato	mitochondrion	55.98	53.64
Solyc03g044220.1.1	Tomato	cytosol	55.79	53.55
VIT_07s0129g01110.t01	Wine grape	plastid	57.12	53.46
AT1G47056.1	Thale cress	cytosol, plastid	52.18	53.09
GSMUA_Achr3P28280_001	Banana	plastid	48.96	52.33
AT4G07400.1	Thale cress	nucleus	53.89	51.26
GSMUA_Achr9P11380_001	Banana	cytosol	43.07	50.67
GSMUA_Achr8P15580_001	Banana	cytosol	38.33	49.51
GSMUA_Achr9P22570_001	Banana	plastid	40.42	48.41
GSMUA_Achr2P05250_001	Banana	cytosol	44.59	48.35
GSMUA_Achr4P12920_001	Banana	plastid	46.3	47.75
OQU89081	Sorghum	cytosol	46.87	47.05
TraesCS5A01G161400.1	Wheat	cytosol, plastid	45.92	45.92
TraesCS5B01G158800.1	Wheat	plastid	45.73	45.73
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	45.73	45.73
Zm00001d019677_P001	Maize	cytosol	45.35	45.52
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	37.38	44.67
Os04t0505700-01	Rice	cytosol, mitochondrion	34.91	44.34
HORVU5Hr1G050420.1	Barley	plastid	45.73	43.66
CDY01426	Canola	cytosol	88.61	43.12
Zm00001d003103_P001	Maize	plastid	42.5	43.08
CDY12824	Canola	nucleus	88.05	42.57
KXG26667	Sorghum	plastid	37.76	42.52
TraesCS2A01G359900.1	Wheat	cytosol	42.69	41.59
Zm00001d025812_P001	Maize	plastid	42.88	41.39
Zm00001d025808_P001	Maize	plastid	42.69	41.21
HORVU0Hr1G005070.1	Barley	plastid	42.13	39.78
GSMUA_Achr9P18840_001	Banana	plastid	48.77	35.21
AT5G23340.1	Thale cress	cytosol	17.27	22.47
AT3G07550.2	Thale cress	cytosol	13.85	18.48
AT4G15475.1	Thale cress	cytosol	20.68	17.87
AT3G58530.1	Thale cress	cytosol	11.76	17.56
AT1G77000.1	Thale cress	cytosol	11.95	17.5
AT5G25350.1	Thale cress	cytosol	20.49	17.34
AT1G21410.1	Thale cress	cytosol	11.57	16.94
AT2G25490.1	Thale cress	plastid	19.92	16.72
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	19.35	15.89
AT5G01720.1	Thale cress	vacuole	18.6	14.74
Zm00001d037295_P001	Maize	mitochondrion	6.45	13.93
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.5	13.06
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.12	11.59

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:836860	ProteinID:AED98320.1	EMBL:AF263378
EMBL:AK226338	ArrayExpress:AT5G67250	EnsemblPlantsGene:AT5G67250	RefSeq:AT5G67250	TAIR:AT5G67250	RefSeq:AT5G67250-TAIR-G
EnsemblPlants:AT5G67250.1	TAIR:AT5G67250.1	EMBL:AY056152	ProteinID:BAB10959.1	EMBL:BT002473	EMBL:BT008886
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	RefSeq:NP_569047.1	PFAM:PF00646	PFAM:PF13516	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020121	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR44356	PANTHER:PTHR44356:SF3	UniProt:Q9FE83	Symbol:SKIP2
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000AC2AA	SEG:seg	:

Description

SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]

Coordinates

chr5:-:26831185..26833903

Molecular Weight (calculated)

57395.9 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.013

Length

527 amino acids

Sequence
(BLAST)

001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.