Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71945 | Canola | cytosol | 87.82 | 87.82 |
| CDY06032 | Canola | cytosol | 87.25 | 87.25 |
| Bra007401.1-P | Field mustard | cytosol | 60.62 | 86.99 |
| VIT_08s0007g07030.t01 | Wine grape | cytosol | 66.57 | 67.14 |
| PGSC0003DMT400074998 | Potato | cytosol | 64.87 | 66.19 |
| Solyc06g005380.2.1 | Tomato | cytosol | 64.59 | 65.9 |
| KRH38032 | Soybean | cytosol | 65.44 | 61.11 |
| EES04933 | Sorghum | cytosol | 60.06 | 60.74 |
| GSMUA_Achr2P17760_001 | Banana | cytosol | 60.91 | 60.73 |
| TraesCS3D01G067600.2 | Wheat | cytosol | 58.64 | 59.14 |
| Os02t0281150-01 | Rice | cytosol | 59.21 | 58.71 |
| TraesCS3B01G080300.1 | Wheat | cytosol | 57.79 | 58.12 |
| TraesCS3A01G067800.1 | Wheat | cytosol | 57.51 | 57.83 |
| HORVU3Hr1G012530.12 | Barley | cytosol | 57.51 | 57.83 |
| Zm00001d015974_P002 | Maize | cytosol | 57.22 | 56.42 |
| AT1G21410.1 | Thale cress | cytosol | 18.41 | 18.06 |
| AT5G23340.1 | Thale cress | cytosol | 19.83 | 17.28 |
| AT1G77000.1 | Thale cress | cytosol | 17.28 | 16.94 |
| AT4G15475.1 | Thale cress | cytosol | 24.65 | 14.26 |
| AT2G25490.1 | Thale cress | plastid | 24.08 | 13.54 |
| AT5G27920.1 | Thale cress | cytosol, extracellular, peroxisome | 24.08 | 13.24 |
| AT5G01720.1 | Thale cress | vacuole | 24.65 | 13.08 |
| AT3G50080.1 | Thale cress | cytosol | 18.41 | 12.45 |
| AT5G25350.1 | Thale cress | cytosol | 21.81 | 12.36 |
| AT1G47056.1 | Thale cress | cytosol, plastid | 17.28 | 11.78 |
| AT5G67250.1 | Thale cress | cytosol | 17.56 | 11.76 |
| AT3G07550.2 | Thale cress | cytosol | 13.03 | 11.65 |
| AT4G07400.1 | Thale cress | nucleus | 15.86 | 10.11 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825022 | ProteinID:AEE79796.1 | ArrayExpress:AT3G58530 | EnsemblPlantsGene:AT3G58530 |
| RefSeq:AT3G58530 | TAIR:AT3G58530 | RefSeq:AT3G58530-TAIR-G | EnsemblPlants:AT3G58530.1 | TAIR:AT3G58530.1 | EMBL:AY054560 |
| EMBL:AY064636 | EMBL:AY087448 | Unigene:At.20154 | ProteinID:CAB68191.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_567069.1 |
| PFAM:PF13516 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR44001 | UniProt:Q8LB33 | SMART:SM00367 | SUPFAM:SSF52047 | UniParc:UPI00000A8191 |
| SEG:seg | : | : | : | : | : |
Description
F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
Coordinates
chr3:+:21645547..21648368
Molecular Weight (calculated)
39735.5 Da
IEP (calculated)
7.501
GRAVY (calculated)
0.058
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.