Factsheet for Zm00001d015974_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04933	Sorghum	cytosol	91.34	93.7
TraesCS3B01G080300.1	Wheat	cytosol	77.09	78.63
TraesCS3A01G067800.1	Wheat	cytosol	77.09	78.63
TraesCS3D01G067600.2	Wheat	cytosol	76.54	78.29
HORVU3Hr1G012530.12	Barley	cytosol	76.54	78.06
Os02t0281150-01	Rice	cytosol	77.09	77.53
GSMUA_Achr2P17760_001	Banana	cytosol	62.85	63.56
PGSC0003DMT400074998	Potato	cytosol	60.34	62.43
Solyc06g005380.2.1	Tomato	cytosol	60.34	62.43
VIT_08s0007g07030.t01	Wine grape	cytosol	60.61	62.0
Bra007401.1-P	Field mustard	cytosol	41.34	60.16
CDX71945	Canola	cytosol	58.94	59.77
CDY06032	Canola	cytosol	58.66	59.49
AT3G58530.1	Thale cress	cytosol	56.42	57.22
KRH38032	Soybean	cytosol	58.94	55.82
Zm00001d051219_P001	Maize	cytosol	21.79	18.7
Zm00001d037295_P001	Maize	mitochondrion	11.17	16.39
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	10.06	16.22
Zm00001d038224_P004	Maize	cytosol	15.92	15.49
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	9.78	15.02
Zm00001d007640_P001	Maize	cytosol	26.26	14.97
Zm00001d023825_P001	Maize	cytosol	25.14	13.64
Zm00001d015778_P001	Maize	cytosol	24.3	13.53
Zm00001d019677_P001	Maize	cytosol	19.83	13.52
Zm00001d048695_P001	Maize	cytosol	24.3	13.43
Zm00001d000224_P001	Maize	cytosol	16.2	13.39
Zm00001d003103_P001	Maize	plastid	19.27	13.27
Zm00001d041635_P002	Maize	cytosol	24.3	13.12
Zm00001d053642_P001	Maize	cytosol	23.46	12.9
Zm00001d044622_P002	Maize	mitochondrion	24.3	12.36
Zm00001d005072_P003	Maize	mitochondrion	24.86	12.28
Zm00001d036880_P003	Maize	cytosol	24.86	12.09
Zm00001d025808_P001	Maize	plastid	18.44	12.09
Zm00001d025812_P001	Maize	plastid	18.16	11.9
Zm00001d000408_P001	Maize	cytosol	24.58	11.84
Zm00001d007294_P001	Maize	cytosol	13.41	11.82

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A1D6H4U2	ProteinID:AQK69840.1	ProteinID:AQK69842.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF13516	PANTHER:PTHR44001	PANTHER:PTHR44001:SF1	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000844BF26
EnsemblPlantsGene:Zm00001d015974	EnsemblPlants:Zm00001d015974_P002	EnsemblPlants:Zm00001d015974_T002	SEG:seg	:	:

Description

Leucine Rich Repeat family protein

Coordinates

chr5:-:135675287..135687534

Molecular Weight (calculated)

39704.5 Da

IEP (calculated)

8.321

GRAVY (calculated)

0.156

Length

358 amino acids

Sequence
(BLAST)

001: MAAPAADEAW CRKTVPRVME LVCRRLPQRD ACALLAVSPW CYRALVANSR LWEVLDLREM KNAGNRLISA LSLARYRHLK VLNLEFAQDI EDRYFVHLKE
101: MASFAPFSHF SGISLENLEF LNLNACQKIS DKGIEAVTSL CPNLQRLAIY WIVGLTDSSI GHITKNCKHL VHLNLSGCKN IKDKGMQLIA NNYQGLKRLN
201: ITRCVKLTDD GLNQVLLKCS SLESLNLYAL SSFTDSVYRE IGSLSNLTFL DLCGAQNLTD DGLACISRCG RLTYLNLSWC VRVTDTGIVA IALGCRALEL
301: LSLFGIVGVT DACLEALSKS CSSSLTTLDV NGCIGIKRRS RDDLLKLFPS LSCFKVHS

Best Arabidopsis Sequence Match ( AT3G58530.1 )
(BLAST)

001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS

Arabidopsis Description

F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.