Factsheet for Zm00001d000224_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03986	Sorghum	cytosol	81.52	92.65
Os01t0881900-01	Rice	cytosol	72.29	82.59
TraesCS3D01G402900.2	Wheat	cytosol	71.82	81.84
TraesCS3A01G407700.1	Wheat	cytosol	71.36	81.32
TraesCS3B01G440600.2	Wheat	cytosol	71.13	80.84
Zm00001d038224_P004	Maize	cytosol	67.44	79.35
HORVU3Hr1G091200.4	Barley	cytosol	70.21	72.38
GSMUA_Achr10P...	Banana	cytosol	57.51	70.14
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	54.04	68.62
KRH64574	Soybean	cytosol	49.88	67.29
GSMUA_Achr6P18620_001	Banana	cytosol	55.89	65.94
Bra016422.1-P	Field mustard	cytosol	52.89	64.87
Solyc04g063380.2.1	Tomato	cytosol	54.5	64.84
CDX88336	Canola	cytosol	48.27	64.51
GSMUA_AchrUn_...	Banana	cytosol	54.27	63.86
CDY67973	Canola	plasma membrane	53.35	63.81
CDX96592	Canola	cytosol	53.12	63.54
CDX87549	Canola	cytosol	51.96	63.38
Bra015699.1-P	Field mustard	cytosol	51.73	63.28
AT1G21410.1	Thale cress	cytosol	52.42	63.06
KRH53355	Soybean	cytosol	53.58	62.37
Bra003692.1-P	Field mustard	cytosol	51.04	61.56
CDX68067	Canola	cytosol	50.81	61.28
AT1G77000.1	Thale cress	cytosol	50.81	61.11
CDY58589	Canola	extracellular	18.48	61.07
CDX79184	Canola	cytosol	50.35	60.72
KRH15905	Soybean	cytosol	51.96	60.65
KRH18090	Soybean	cytosol	52.42	60.53
CDY58588	Canola	extracellular	18.01	59.09
VIT_18s0001g15010.t01	Wine grape	mitochondrion	55.2	55.84
Zm00001d051219_P001	Maize	cytosol	18.24	18.94
Zm00001d015974_P002	Maize	cytosol	13.39	16.2
Zm00001d007294_P001	Maize	cytosol	14.55	15.52
Zm00001d007640_P001	Maize	cytosol	20.55	14.17
Zm00001d025808_P001	Maize	plastid	17.55	13.92
Zm00001d025812_P001	Maize	plastid	17.55	13.92
Zm00001d048695_P001	Maize	cytosol	20.79	13.89
Zm00001d003103_P001	Maize	plastid	16.4	13.65
Zm00001d019677_P001	Maize	cytosol	16.4	13.52
Zm00001d023825_P001	Maize	cytosol	20.55	13.48
Zm00001d041635_P002	Maize	cytosol	19.86	12.97
Zm00001d015778_P001	Maize	cytosol	19.17	12.91
Zm00001d044622_P002	Maize	mitochondrion	20.32	12.5
Zm00001d053642_P001	Maize	cytosol	18.48	12.29
Zm00001d005072_P003	Maize	mitochondrion	19.63	11.72
Zm00001d037295_P001	Maize	mitochondrion	6.47	11.48
Zm00001d036880_P003	Maize	cytosol	19.4	11.41
Zm00001d000408_P001	Maize	cytosol	18.71	10.9
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	4.62	9.01
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	4.39	8.15

Protein Annotations

EntrezGene:100274332	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	UniProt:A0A1D6DR87	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44673
PANTHER:PTHR44673:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000844AD62	EnsemblPlantsGene:Zm00001d000224
EnsemblPlants:Zm00001d000224_P001	EnsemblPlants:Zm00001d000224_T001	SEG:seg	:	:	:

Description

F-box protein SKP2A

Coordinates

chrB73V4_ctg26:-:181370..184748

Molecular Weight (calculated)

47101.5 Da

IEP (calculated)

6.662

GRAVY (calculated)

0.057

Length

433 amino acids

Sequence
(BLAST)

001: MDSAQQPTGE LNNSFDTLMV SGGDQSRQPQ DAGNETSFTN WKDLPMELLL RIISLVGDDR IVIVASGVCT GWRDTLGWGV ANLSLSCLLH VSAIVPCCAM
101: QIKQYILFTS VPILDDHMVF LNDLLEREVF FDQESVKFRC QDRMNDLVIS LAHKFTKLQV LSLRQIRPQL EDSGVEAVAN HCHDLRELDL SRSFRLSDRS
201: LYALAHGCPQ LTRLNISGCS SFSDVALVFL SSQCGNLRCL NLCGCVRAAS DRALQAIACY CGQLQSLNLG WCDGITDKGV TSLASGCPEL RAVDLCGCVL
301: ITDESVVALA NGCLHLRSLG LYYCQNITDR AMYSLAANSR VRSRGRGWDA TAKSGGGGKD RERDGLASLN ISQCTALTPP AVQAVCDSFP ALHTCPERHS
401: LNISGCLSLT SVHCACALHP HRAGRVILSN HAY

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.