Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G407700.1 | Wheat | cytosol | 87.86 | 97.11 |
| TraesCS3D01G402900.2 | Wheat | cytosol | 87.38 | 96.58 |
| TraesCS3B01G440600.2 | Wheat | cytosol | 87.38 | 96.33 |
| Os01t0881900-01 | Rice | cytosol | 76.67 | 84.96 |
| EES03986 | Sorghum | cytosol | 74.52 | 82.15 |
| HORVU1Hr1G065030.2 | Barley | cytosol | 68.57 | 75.99 |
| GSMUA_Achr10P... | Banana | cytosol | 60.24 | 71.27 |
| Zm00001d000224_P001 | Maize | cytosol | 72.38 | 70.21 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 55.0 | 67.74 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 58.81 | 67.3 |
| KRH64574 | Soybean | cytosol | 51.43 | 67.29 |
| CDX88336 | Canola | cytosol | 50.48 | 65.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.14 | 65.22 |
| AT1G21410.1 | Thale cress | cytosol | 55.71 | 65.0 |
| Bra016422.1-P | Field mustard | cytosol | 54.52 | 64.87 |
| Solyc04g063380.2.1 | Tomato | cytosol | 55.71 | 64.29 |
| CDY67973 | Canola | plasma membrane | 55.24 | 64.09 |
| CDX96592 | Canola | cytosol | 55.0 | 63.81 |
| CDX87549 | Canola | cytosol | 53.33 | 63.1 |
| Bra015699.1-P | Field mustard | cytosol | 53.1 | 62.99 |
| KRH53355 | Soybean | cytosol | 55.24 | 62.37 |
| Bra003692.1-P | Field mustard | cytosol | 52.86 | 61.84 |
| CDX79184 | Canola | cytosol | 52.62 | 61.56 |
| CDX68067 | Canola | cytosol | 52.62 | 61.56 |
| KRH15905 | Soybean | cytosol | 53.57 | 60.65 |
| AT1G77000.1 | Thale cress | cytosol | 51.9 | 60.56 |
| CDY58589 | Canola | extracellular | 18.81 | 60.31 |
| KRH18090 | Soybean | cytosol | 53.57 | 60.0 |
| CDY58588 | Canola | extracellular | 18.33 | 58.33 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 59.05 | 57.94 |
| HORVU6Hr1G059950.1 | Barley | cytosol | 17.62 | 17.75 |
| HORVU4Hr1G014630.1 | Barley | cytosol | 15.24 | 16.58 |
| HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 10.48 | 16.54 |
| HORVU3Hr1G012530.12 | Barley | cytosol | 13.81 | 16.52 |
| HORVU5Hr1G050420.1 | Barley | plastid | 17.14 | 13.04 |
| HORVU7Hr1G090240.1 | Barley | cytosol | 16.67 | 12.99 |
| HORVU0Hr1G005070.1 | Barley | plastid | 17.14 | 12.9 |
| HORVU5Hr1G029670.1 | Barley | mitochondrion | 14.52 | 11.89 |
| HORVU5Hr1G000950.4 | Barley | plastid | 12.62 | 11.86 |
| HORVU6Hr1G038430.3 | Barley | plastid | 18.1 | 11.64 |
| HORVU5Hr1G047420.2 | Barley | cytosol, mitochondrion, plastid | 18.57 | 11.56 |
| HORVU5Hr1G024060.1 | Barley | cytosol, plastid | 20.95 | 10.44 |
Protein Annotations
| MapMan:19.2.2.8.1.4.1 | Gene3D:3.80.10.10 | UniProt:A0A287M999 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:HORVU3Hr1G091200 | EnsemblPlants:HORVU3Hr1G091200.4 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF13516 | PANTHER:PTHR44673 | PANTHER:PTHR44673:SF2 | SMART:SM00367 | SUPFAM:SSF52047 |
| UniParc:UPI000B468660 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:634851871..634856352
Molecular Weight (calculated)
45014.9 Da
IEP (calculated)
7.079
GRAVY (calculated)
0.002
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: PKLDFHPPEN RTDRSPPAGG GAAAASLLGL LGLGEWMKMV NAQMVSGYLD NSFNALMVSG GVESGQTQNG GTDTTLSGWK DLPMELLLRI ISVAGDDRMV
101: IVACGVCTGW RDALGWGATS LSFSWCQDHM NELVISLAHK FPKLQVLSLR QIKPQLEDDA VEAVANSCHD LRELDLSRSF RLSDRSLYAL AHGCPHLTRL
201: NISGCSNFSD AALIYLTSQC KNLKCLNLCG CVRAATDRAL QAIACNCSQL QSLNLGWCDT VTDGGVTSLA SGCPELRAVD LCGCVLITDE SVVALANGCP
301: HLRSLGLYYC QNITDRAMYS LAEKSRIRSK GMSWDTAKNS RSCSRDDKDG LASLNISQCT ALTPPAVQAV CDSFPALHTC PDRHSLIISG CLSLTAVHCA
401: CAHHRHRAGA GRAILSNHAY
101: IVACGVCTGW RDALGWGATS LSFSWCQDHM NELVISLAHK FPKLQVLSLR QIKPQLEDDA VEAVANSCHD LRELDLSRSF RLSDRSLYAL AHGCPHLTRL
201: NISGCSNFSD AALIYLTSQC KNLKCLNLCG CVRAATDRAL QAIACNCSQL QSLNLGWCDT VTDGGVTSLA SGCPELRAVD LCGCVLITDE SVVALANGCP
301: HLRSLGLYYC QNITDRAMYS LAEKSRIRSK GMSWDTAKNS RSCSRDDKDG LASLNISQCT ALTPPAVQAV CDSFPALHTC PDRHSLIISG CLSLTAVHCA
401: CAHHRHRAGA GRAILSNHAY
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.