Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0881900-01 | Rice | cytosol | 85.3 | 85.75 |
| TraesCS3D01G402900.2 | Wheat | cytosol | 83.46 | 83.68 |
| TraesCS3A01G407700.1 | Wheat | cytosol | 82.94 | 83.16 |
| TraesCS3B01G440600.2 | Wheat | cytosol | 82.41 | 82.41 |
| Zm00001d000224_P001 | Maize | cytosol | 92.65 | 81.52 |
| EES18256 | Sorghum | cytosol, nucleus, plastid | 76.38 | 78.86 |
| HORVU3Hr1G091200.4 | Barley | cytosol | 82.15 | 74.52 |
| GSMUA_Achr10P... | Banana | cytosol | 66.4 | 71.27 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 60.89 | 68.04 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 65.09 | 67.57 |
| KRH64574 | Soybean | cytosol | 56.69 | 67.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.25 | 65.49 |
| CDX88336 | Canola | cytosol | 54.86 | 64.51 |
| Bra016422.1-P | Field mustard | cytosol | 59.58 | 64.31 |
| Solyc04g063380.2.1 | Tomato | cytosol | 61.15 | 64.01 |
| CDY67973 | Canola | plasma membrane | 60.37 | 63.54 |
| CDX96592 | Canola | cytosol | 60.1 | 63.26 |
| CDX87549 | Canola | cytosol | 58.53 | 62.82 |
| AT1G21410.1 | Thale cress | cytosol | 59.32 | 62.78 |
| Bra015699.1-P | Field mustard | cytosol | 58.27 | 62.71 |
| KRH53355 | Soybean | cytosol | 60.63 | 62.1 |
| Bra003692.1-P | Field mustard | cytosol | 57.48 | 61.0 |
| CDX68067 | Canola | cytosol | 57.22 | 60.72 |
| AT1G77000.1 | Thale cress | cytosol | 57.22 | 60.56 |
| KRH18090 | Soybean | cytosol | 59.58 | 60.53 |
| CDX79184 | Canola | cytosol | 56.96 | 60.45 |
| KRH15905 | Soybean | cytosol | 58.79 | 60.38 |
| CDY58589 | Canola | extracellular | 20.47 | 59.54 |
| CDY58588 | Canola | extracellular | 19.95 | 57.58 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 62.99 | 56.07 |
| KXG30697 | Sorghum | cytosol | 21.26 | 19.19 |
| EES09509 | Sorghum | cytosol | 18.37 | 18.13 |
| EES04933 | Sorghum | cytosol | 14.7 | 16.05 |
| EES08900 | Sorghum | cytosol | 23.1 | 13.86 |
| KXG26667 | Sorghum | plastid | 16.27 | 13.25 |
| KXG29052 | Sorghum | plastid | 22.83 | 13.18 |
| EER90022 | Sorghum | cytosol, plastid | 21.0 | 12.78 |
| OQU89081 | Sorghum | cytosol | 17.59 | 12.76 |
| EES06473 | Sorghum | cytosol, peroxisome, plasma membrane | 21.0 | 12.21 |
| KXG23663 | Sorghum | cytosol | 21.0 | 12.08 |
| KXG22793 | Sorghum | nucleus | 21.26 | 11.64 |
| EES07863 | Sorghum | nucleus | 21.0 | 11.58 |
Protein Annotations
| MapMan:19.2.2.8.1.4.1 | Gene3D:3.80.10.10 | EntrezGene:8063136 | UniProt:C5XRF6 | EnsemblPlants:EES03986 | ProteinID:EES03986 |
| ProteinID:EES03986.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| PFAM:PF00646 | PFAM:PF13516 | PANTHER:PTHR44673 | PANTHER:PTHR44673:SF2 | SMART:SM00367 | EnsemblPlantsGene:SORBI_3003G378000 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | unigene:Sbi.11031 | UniParc:UPI0001A8536C | RefSeq:XP_002458866.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:69212675..69216618
Molecular Weight (calculated)
41023.9 Da
IEP (calculated)
6.744
GRAVY (calculated)
-0.001
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGAQPPSGQ LNNSFNTLMV SGDEQSQQPQ DAGNETSFTN WKDLPMELLL RIISLVGDDR IVIVASGVCT GWRDTLGWGV ANLSLSWCQD HMNDLVMSLA
101: HKFTKLQVLS LRQIRAQLED SGVEAVANNC HDLRELDLSR SFRLSDLSLY ALAHGCPHLT RLNISGCSNF SDSALVFLSS QCKNLKCLNL CGCVRAASDR
201: ALQAIACNCG QLQSLNLGWC DSITDKGVTS LASGCPELRA VDLCGCVLIT DESVVALANG CPHLRSLGLY YCQNITDRAM YSLAANSRVR SQGRGWDAAV
301: KSGGSSKDRE RDGLASLNIS QCTALTPPAV QAVCDSFPAL HTCPERHSLI ISGCLSLTSV HCACALHPHR AGRVILSNHA Y
101: HKFTKLQVLS LRQIRAQLED SGVEAVANNC HDLRELDLSR SFRLSDLSLY ALAHGCPHLT RLNISGCSNF SDSALVFLSS QCKNLKCLNL CGCVRAASDR
201: ALQAIACNCG QLQSLNLGWC DSITDKGVTS LASGCPELRA VDLCGCVLIT DESVVALANG CPHLRSLGLY YCQNITDRAM YSLAANSRVR SQGRGWDAAV
301: KSGGSSKDRE RDGLASLNIS QCTALTPPAV QAVCDSFPAL HTCPERHSLI ISGCLSLTSV HCACALHPHR AGRVILSNHA Y
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.