Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G402900.2 | Wheat | cytosol | 98.68 | 98.68 |
| TraesCS3B01G440600.2 | Wheat | cytosol | 98.42 | 98.16 |
| HORVU3Hr1G091200.4 | Barley | cytosol | 97.11 | 87.86 |
| Os01t0881900-01 | Rice | cytosol | 86.05 | 86.28 |
| EES03986 | Sorghum | cytosol | 83.16 | 82.94 |
| TraesCS1A01G264900.1 | Wheat | cytosol | 75.79 | 77.84 |
| GSMUA_Achr10P... | Banana | cytosol | 67.89 | 72.68 |
| Zm00001d000224_P001 | Maize | cytosol | 81.32 | 71.36 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 61.05 | 68.04 |
| KRH64574 | Soybean | cytosol | 57.37 | 67.91 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 65.26 | 67.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.95 | 66.03 |
| CDX88336 | Canola | cytosol | 56.05 | 65.74 |
| Bra016422.1-P | Field mustard | cytosol | 60.53 | 65.16 |
| Solyc04g063380.2.1 | Tomato | cytosol | 62.11 | 64.84 |
| AT1G21410.1 | Thale cress | cytosol | 61.32 | 64.72 |
| CDY67973 | Canola | plasma membrane | 61.32 | 64.36 |
| CDX96592 | Canola | cytosol | 61.05 | 64.09 |
| CDX87549 | Canola | cytosol | 59.21 | 63.38 |
| Bra015699.1-P | Field mustard | cytosol | 58.95 | 63.28 |
| KRH53355 | Soybean | cytosol | 61.58 | 62.9 |
| Bra003692.1-P | Field mustard | cytosol | 58.68 | 62.12 |
| CDX79184 | Canola | cytosol | 58.42 | 61.84 |
| CDX68067 | Canola | cytosol | 58.42 | 61.84 |
| KRH15905 | Soybean | cytosol | 60.26 | 61.73 |
| KRH18090 | Soybean | cytosol | 60.26 | 61.07 |
| AT1G77000.1 | Thale cress | cytosol | 57.63 | 60.83 |
| CDY58589 | Canola | extracellular | 20.79 | 60.31 |
| CDY58588 | Canola | extracellular | 20.26 | 58.33 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 65.53 | 58.18 |
| TraesCS6A01G234100.2 | Wheat | cytosol | 20.26 | 18.47 |
| TraesCS3A01G067800.1 | Wheat | cytosol | 15.53 | 16.81 |
| TraesCS4A01G230600.2 | Wheat | plastid | 16.58 | 15.56 |
| TraesCS4A01G142500.3 | Wheat | plastid | 23.68 | 14.31 |
| TraesCS2A01G359900.1 | Wheat | cytosol | 18.95 | 13.31 |
| TraesCS5A01G161400.1 | Wheat | cytosol, plastid | 18.42 | 13.28 |
| TraesCS5A01G091800.2 | Wheat | cytosol | 22.11 | 12.71 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 20.0 | 11.71 |
| TraesCS5A01G150800.2 | Wheat | mitochondrion | 20.79 | 11.58 |
| TraesCS6A01G181900.1 | Wheat | cytosol | 19.21 | 11.25 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G407700.1 | EnsemblPlantsGene:TraesCS3A01G407700 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44673 |
| PANTHER:PTHR44673:SF2 | PFAM:PF13516 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 | MapMan:19.2.2.8.1.4.1 |
Description
No Description!
Coordinates
chr3A:+:652820933..652823188
Molecular Weight (calculated)
40785.7 Da
IEP (calculated)
7.213
GRAVY (calculated)
0.009
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNAQMVSGY LDNSFNALMV SGGGESGQTQ NGGTDTTLSG WKDLPMELLL RIISVAGDDR MAIVASGVCT GWRDALGWGA TSLSFSWCQD HMNELVISLA
101: HKFTKLQVLS LRQIKPQLED SAVEAVANSC HDLRELDLSR SFRLSDRSLY ALAHGCPHLT RLNISGCSNF SDAALIYLTS QCKNLKCLNL CGCVRAASDR
201: ALQAIARNCS QLQSLNLGWC DTVTDGGVTS LASGCPELRA VDLCGCVLIT DESVVALANG CPHLRSLGLY YCQNITDRAM YSLAENSRIR SKGMSWDTAK
301: SSRGRDDKDG LASLNISQCT ALTPPAVQAV CDSFPALHTC PERHSLIISG CLSLTAVHCA CAHHRHRAGA GRAILSNHAY
101: HKFTKLQVLS LRQIKPQLED SAVEAVANSC HDLRELDLSR SFRLSDRSLY ALAHGCPHLT RLNISGCSNF SDAALIYLTS QCKNLKCLNL CGCVRAASDR
201: ALQAIARNCS QLQSLNLGWC DTVTDGGVTS LASGCPELRA VDLCGCVLIT DESVVALANG CPHLRSLGLY YCQNITDRAM YSLAENSRIR SKGMSWDTAK
301: SSRGRDDKDG LASLNISQCT ALTPPAVQAV CDSFPALHTC PERHSLIISG CLSLTAVHCA CAHHRHRAGA GRAILSNHAY
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.