Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G265100.1 | Wheat | cytosol | 98.92 | 98.92 |
| TraesCS1B01G275600.1 | Wheat | cytosol | 98.65 | 96.31 |
| HORVU1Hr1G065030.2 | Barley | cytosol | 96.76 | 94.46 |
| EES18256 | Sorghum | cytosol, nucleus, plastid | 82.16 | 82.38 |
| Zm00001d038224_P004 | Maize | cytosol | 81.62 | 82.07 |
| Os05t0425700-01 | Rice | cytosol | 82.7 | 81.38 |
| TraesCS3A01G407700.1 | Wheat | cytosol | 77.84 | 75.79 |
| GSMUA_Achr10P... | Banana | cytosol | 67.57 | 70.42 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 64.05 | 69.5 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 66.49 | 67.03 |
| Solyc04g063380.2.1 | Tomato | cytosol | 64.86 | 65.93 |
| KRH64574 | Soybean | cytosol | 57.03 | 65.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 65.14 | 65.49 |
| CDX88336 | Canola | cytosol | 56.49 | 64.51 |
| AT1G21410.1 | Thale cress | cytosol | 62.7 | 64.44 |
| Bra016422.1-P | Field mustard | cytosol | 61.08 | 64.02 |
| CDX87549 | Canola | cytosol | 60.54 | 63.1 |
| Bra015699.1-P | Field mustard | cytosol | 60.27 | 62.99 |
| CDX96592 | Canola | cytosol | 61.35 | 62.71 |
| CDY67973 | Canola | plasma membrane | 61.08 | 62.43 |
| CDX79184 | Canola | cytosol | 60.0 | 61.84 |
| Bra003692.1-P | Field mustard | cytosol | 59.73 | 61.56 |
| KRH53355 | Soybean | cytosol | 61.89 | 61.56 |
| KRH15905 | Soybean | cytosol | 61.62 | 61.46 |
| CDX68067 | Canola | cytosol | 59.46 | 61.28 |
| KRH18090 | Soybean | cytosol | 61.89 | 61.07 |
| AT1G77000.1 | Thale cress | cytosol | 58.92 | 60.56 |
| CDY58589 | Canola | extracellular | 21.35 | 60.31 |
| CDY58588 | Canola | extracellular | 20.81 | 58.33 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 66.49 | 57.48 |
| TraesCS6A01G234100.2 | Wheat | cytosol | 20.81 | 18.47 |
| TraesCS3A01G067800.1 | Wheat | cytosol | 15.14 | 15.95 |
| TraesCS4A01G230600.2 | Wheat | plastid | 15.95 | 14.57 |
| TraesCS4A01G142500.3 | Wheat | plastid | 23.51 | 13.83 |
| TraesCS5A01G161400.1 | Wheat | cytosol, plastid | 19.46 | 13.66 |
| TraesCS5A01G091800.2 | Wheat | cytosol | 22.97 | 12.86 |
| TraesCS2A01G359900.1 | Wheat | cytosol | 18.11 | 12.38 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 21.08 | 12.02 |
| TraesCS5A01G150800.2 | Wheat | mitochondrion | 21.62 | 11.73 |
| TraesCS6A01G181900.1 | Wheat | cytosol | 20.54 | 11.71 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G264900.1 | EnsemblPlantsGene:TraesCS1A01G264900 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44673 |
| PANTHER:PTHR44673:SF2 | PFAM:PF13516 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 | MapMan:19.2.2.8.1.4.1 |
Description
No Description!
Coordinates
chr1A:+:460639089..460641864
Molecular Weight (calculated)
39659.6 Da
IEP (calculated)
7.229
GRAVY (calculated)
0.075
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSARSVDRQ LDACFSNLMV SSGGGRGQAE TGGAMPMLSG WKDLPMELLM RIISVAGDDR IVVVASGVCT GWRDALGWGV TNLSLSWCQQ NMNNLTISFA
101: HKFTKLQVLT LRQIKPQLED SAVEAVANYC YDLRELDLSR SFRLSDRSLY ALANGCPRLT KLNISGCSSF SDSALIYLSC HCKNLKSLNL CGCGKAATDE
201: SLQAIAQNCG HLQTLNLGWC DNVTDEGVTS LASGCPDLRA LDLCGCVLIT DESVIALASG CPYLRSLGLY YCQNITDRAM YSLANSCVKS KRGSSSKDVD
301: GLANLNISQC TALTPPAVQA VCDSFPSLHT CPERHSLIIS GCLSLTNVHC ACGLQRHRAG SALQATSHAY
101: HKFTKLQVLT LRQIKPQLED SAVEAVANYC YDLRELDLSR SFRLSDRSLY ALANGCPRLT KLNISGCSSF SDSALIYLSC HCKNLKSLNL CGCGKAATDE
201: SLQAIAQNCG HLQTLNLGWC DNVTDEGVTS LASGCPDLRA LDLCGCVLIT DESVIALASG CPYLRSLGLY YCQNITDRAM YSLANSCVKS KRGSSSKDVD
301: GLANLNISQC TALTPPAVQA VCDSFPSLHT CPERHSLIIS GCLSLTNVHC ACGLQRHRAG SALQATSHAY
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.