Factsheet for TraesCS2A01G359900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	80.22	98.41
HORVU0Hr1G005070.1	Barley	plastid	92.79	89.96
Os04t0505700-01	Rice	cytosol, mitochondrion	67.1	87.47
KXG26667	Sorghum	plastid	70.61	81.62
Zm00001d003103_P001	Maize	plastid	78.0	81.15
Zm00001d025812_P001	Maize	plastid	77.26	76.56
Zm00001d025808_P001	Maize	plastid	77.26	76.56
GSMUA_Achr8P15580_001	Banana	cytosol	41.96	55.64
GSMUA_Achr9P11380_001	Banana	cytosol	45.84	55.36
PGSC0003DMT400008648	Potato	cytosol	15.53	50.3
Solyc04g078490.1.1	Tomato	cytosol	45.29	45.88
VIT_18s0001g09940.t01	Wine grape	plastid	44.55	44.55
CDX81326	Canola	cytosol	42.51	43.89
CDY43846	Canola	plastid	41.4	43.58
Bra032213.1-P	Field mustard	plastid	41.4	43.58
TraesCS5A01G161400.1	Wheat	cytosol, plastid	42.33	43.45
CDY25663	Canola	plastid	41.22	43.39
KRH15408	Soybean	plastid	43.99	43.35
Bra037120.1-P	Field mustard	cytosol	42.14	43.35
CDY18646	Canola	cytosol	41.96	43.32
KRH28425	Soybean	cytosol	41.96	43.16
AT1G47056.1	Thale cress	cytosol, plastid	41.22	43.05
CDX83114	Canola	cytosol	39.37	42.86
KRH77049	Soybean	cytosol	41.22	42.72
AT5G67250.1	Thale cress	cytosol	41.59	42.69
CDX68575	Canola	cytosol	40.11	42.47
Bra029994.1-P	Field mustard	cytosol	40.11	42.47
PGSC0003DMT400053918	Potato	cytosol	42.7	42.08
VIT_07s0129g01110.t01	Wine grape	plastid	43.44	41.74
Solyc03g044220.1.1	Tomato	cytosol	42.33	41.71
KRH05631	Soybean	plastid	43.07	41.39
Solyc02g092990.1.1	Tomato	plastid	41.77	41.09
KRH04530	Soybean	cytosol	40.85	41.0
AT3G50080.1	Thale cress	cytosol	39.56	41.0
PGSC0003DMT400064250	Potato	mitochondrion	41.59	40.91
AT4G07400.1	Thale cress	nucleus	41.59	40.61
KRH57971	Soybean	cytosol	41.4	40.07
KRH52037	Soybean	cytosol	28.65	38.37
PGSC0003DMT400091765	Potato	cytosol	44.55	34.14
CDY12824	Canola	nucleus	42.88	21.28
CDY01426	Canola	cytosol	42.51	21.24
TraesCS6A01G234100.2	Wheat	cytosol	15.71	20.38
KRH61346	Soybean	cytosol	24.77	19.2
TraesCS3A01G407700.1	Wheat	cytosol	13.31	18.95
TraesCS3A01G067800.1	Wheat	cytosol	12.01	18.52
TraesCS1A01G264900.1	Wheat	cytosol	12.38	18.11
TraesCS6A01G181900.1	Wheat	cytosol	20.52	17.1
TraesCS4A01G142500.3	Wheat	plastid	19.41	16.69
TraesCS7A01G377500.1	Wheat	cytosol	19.96	16.64
TraesCS5A01G150800.2	Wheat	mitochondrion	19.22	15.25
TraesCS4A01G230600.2	Wheat	plastid	11.28	15.06
TraesCS5A01G091800.2	Wheat	cytosol	17.56	14.37

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF12937	PANTHER:PTHR44356	PANTHER:PTHR44356:SF4	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
EnsemblPlantsGene:TraesCS2A01G359900	EnsemblPlants:TraesCS2A01G359900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:603687062..603688917

Molecular Weight (calculated)

55420.6 Da

IEP (calculated)

8.284

GRAVY (calculated)

0.102

Length

541 amino acids

Sequence
(BLAST)

001: MGQSXXXXXX XXXXXXXXXX XPSSMAPPMP AGAGSGSLDP PPFAPPPPAR DHTQDLPDEI LTLVFASLTP AERNACSLTC ARWKEVDAAT RHRLSLDARA
101: MLGYNTPAIF SRFTAVTKLA LRCARGSGAD SLNDGGAAAV AATLPSDRLA RLKLRGLRQL SDAGLASLAA AAPVLRKLSV ASCTFGPKAF VAVLQSCPVL
201: EDLSVKRLRG LPDTSGAITA TAITEDILFP QAMSLRSVCL KDLYSALCFV PLVSSSPNLR SLKILRCSGA WDLPLEVIAA RAPGLVEIHL EKLQVGDRGL
301: TAVSACANLE VLFLVKTPEC TDEGIISVAQ NCHKLRKLHI DGWRTNRIGD CGLMAVARGC PDLQELVLIG VNPTVQSLRM LGEHCRALER LALCGCETVG
401: DTEIICLAER CAALKKLCIK GCPVTDRGMG ALNGGCPSLV KVKLKRCRGV SYECVEHLKM ARGGSFSISL DIVLEHDAVA PSENGVQETG QQAQVTELTG
501: QMAAMDLPTN AAGAQSFAQA NSRMRSVMSA LRRRFGNPPP A

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.