CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67250.1	CDX68112	AT1G75950.1	12169662
AT5G67250.1	CDX73212	AT1G75950.1	12169662
AT5G67250.1	CDX80590	AT1G75950.1	12169662
AT5G67250.1	CDX85931	AT1G75950.1	12169662
AT5G67250.1	CDX87650	AT1G75950.1	12169662
AT5G67250.1	CDY13521	AT1G75950.1	12169662
AT5G67250.1	CDY39073	AT1G75950.1	12169662
AT5G67250.1	CDX68112	AT1G75950.1	21798944
AT5G67250.1	CDX73212	AT1G75950.1	21798944
AT5G67250.1	CDX80590	AT1G75950.1	21798944
AT5G67250.1	CDX85931	AT1G75950.1	21798944
AT5G67250.1	CDX87650	AT1G75950.1	21798944
AT5G67250.1	CDY13521	AT1G75950.1	21798944
AT5G67250.1	CDY39073	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12824	Canola	nucleus	92.34	91.74
AT5G67250.1	Thale cress	cytosol	43.12	88.61
CDX81326	Canola	cytosol	42.47	87.79
CDY18646	Canola	cytosol	42.11	87.02
CDX83114	Canola	cytosol	33.52	73.04
CDX68575	Canola	cytosol	33.8	71.62
KRH77049	Soybean	cytosol	27.7	57.47
KRH28425	Soybean	cytosol	27.7	57.03
KRH04530	Soybean	cytosol	27.33	54.92
Solyc02g092990.1.1	Tomato	plastid	27.7	54.55
PGSC0003DMT400064250	Potato	mitochondrion	27.42	54.0
KRH57971	Soybean	cytosol	27.52	53.31
VIT_07s0129g01110.t01	Wine grape	plastid	27.7	53.29
PGSC0003DMT400053918	Potato	cytosol	26.96	53.19
Solyc03g044220.1.1	Tomato	cytosol	26.69	52.64
CDY43846	Canola	plastid	24.84	52.33
CDY25663	Canola	plastid	24.75	52.14
GSMUA_Achr9P11380_001	Banana	cytosol	21.33	51.56
GSMUA_Achr3P28280_001	Banana	plastid	23.45	51.52
GSMUA_Achr8P15580_001	Banana	cytosol	18.93	50.25
GSMUA_Achr2P05250_001	Banana	cytosol	22.16	49.38
GSMUA_Achr4P12920_001	Banana	plastid	23.08	48.92
OQU89081	Sorghum	cytosol	23.18	47.81
GSMUA_Achr9P22570_001	Banana	plastid	19.3	47.5
TraesCS5A01G161400.1	Wheat	cytosol, plastid	22.81	46.87
TraesCS5B01G158800.1	Wheat	plastid	22.71	46.68
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	22.71	46.68
Zm00001d019677_P001	Maize	cytosol	22.53	46.48
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	18.47	45.35
Os04t0505700-01	Rice	cytosol, mitochondrion	17.36	45.3
Zm00001d003103_P001	Maize	plastid	21.61	45.0
HORVU5Hr1G050420.1	Barley	plastid	22.81	44.75
KXG26667	Sorghum	plastid	19.11	44.23
Zm00001d025812_P001	Maize	plastid	21.61	42.86
Zm00001d025808_P001	Maize	plastid	21.51	42.67
TraesCS2A01G359900.1	Wheat	cytosol	21.24	42.51
HORVU0Hr1G005070.1	Barley	plastid	21.05	40.86
GSMUA_Achr9P18840_001	Banana	plastid	25.48	37.81
CDX88014	Canola	cytosol	8.31	22.22
CDY46953	Canola	cytosol	8.03	21.17
CDY40798	Canola	cytosol	7.94	20.92
CDX71945	Canola	cytosol	6.28	19.26
CDY06032	Canola	cytosol	6.19	18.98
CDY09760	Canola	cytosol	10.8	18.66
CDX90588	Canola	cytosol	10.8	18.6
CDY35942	Canola	cytosol	6.74	18.48
CDY28039	Canola	cytosol	6.65	18.46
CDX80503	Canola	cytosol	10.43	18.2
CDX88173	Canola	cytosol	10.34	18.01
CDY35358	Canola	cytosol	10.16	17.66
CDX87090	Canola	cytosol	9.88	17.37
CDY19807	Canola	cytosol	9.88	17.37
CDX68067	Canola	cytosol	5.72	17.27
CDX87549	Canola	cytosol	5.63	17.18
CDX79184	Canola	cytosol	5.63	16.99
CDX88336	Canola	cytosol	5.08	16.98
CDX76980	Canola	cytosol	9.33	16.86
CDX96592	Canola	cytosol	5.45	16.3
CDY67973	Canola	plasma membrane	5.45	16.3
CDY19741	Canola	cytosol	9.23	16.21
CDX80608	Canola	cytosol	9.51	16.09
CDY58589	Canola	extracellular	1.94	16.03
CDX88253	Canola	cytosol	9.42	15.94
CDY58588	Canola	extracellular	1.94	15.91
CDY53337	Canola	cytosol	9.23	15.65
CDX80753	Canola	endoplasmic reticulum	9.7	15.53
CDY45764	Canola	cytosol, peroxisome, plastid	8.31	15.44
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	9.6	15.38
Zm00001d037295_P001	Maize	mitochondrion	3.23	14.34
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	2.86	13.96
CDY29091	Canola	plastid	2.22	13.87
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	2.86	13.3

Protein Annotations

Gene3D:1.20.1280.50	MapMan:16.10.2.5	MapMan:19.2.2.8.1.4.6	Gene3D:3.30.420.10	Gene3D:3.80.10.10	GO:A0A078EJX3
EnsemblPlants:CDY01426	ProteinID:CDY01426	ProteinID:CDY01426.1	ncoils:Coil	InterPro:Exonuclease_RNaseT/DNA_pol3	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00112425001
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:IPR036397	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF00929	PFAM:PF13516	PFscan:PS50181	PANTHER:PTHR44356
PANTHER:PTHR44356:SF3	InterPro:REX1-like_exo	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00256	SMART:SM00367
SMART:SM00479	SUPFAM:SSF52047	SUPFAM:SSF53098	SUPFAM:SSF81383	UniParc:UPI0004EDDA4A	SEG:seg

Description

BnaA07g11990D

Coordinates

chrLK031926:+:994097..998699

Molecular Weight (calculated)

120575.0 Da

IEP (calculated)

8.599

GRAVY (calculated)

-0.355

Length

1083 amino acids

Sequence
(BLAST)

0001: MGQAPSSTAE SNGREVDLRL WSVSPLIISG GESMDSGKSD RDYTLDLPDE CLAHVFQYLG AGDRKRCSLV CKRWLFVDGQ NRHRLSLDAR AEIFSFLTSM
0101: FDRFDSVTKL ALRCDRKSVS LSDEALVVIS VRCLNLSRVK LRGCREITDL GMVEFARNCR NLKKLSVGSC NFGAKGVNAM LEHCKLLEEL SVKRLRGIHE
0201: AAELIHLPGD GSSSSTLRSI CLKELVNGQV FEPLVASTRT LKTLKIIRCL GDWDKVLQMI GEGDSSLSEI HLERLQVSDF GLSAISKCSK VETLHIVKTP
0301: ECSNFGLIDV AERCKLLRKL HIDGWRTNRI GDEGLVAVAR HCLNLQELVL IGVNATHKSL SAIASNCEKL ERLALCGSGT IGDAEIACIA KKCGALRKFC
0401: IKGCPVSDLG IEALAAGCPN LVKLKVKKCK VVTGEIGEWL REQRRTLVVS MDGDETEATV AVDGESETAL EEPRVGQAGG GVPEIVGSSN GGGSNNGGSR
0501: LATIRSKFGF FAGRNLVSCR FRRWSHNDNG SIFIRTKHSN VESYSTVKAS SVLHTLVLVM EHKLATAEKK VLVELVKLVQ KRGLEGEKGG WKDFLNSYDK
0601: KLGSSISDPS RRSHDVLVAF LMSFDKEGDR QLLARILQCD ANRNLIEKFK QESPDKETPE QRLVRMTITH PRYPIHYAFP SHAQDWFVTN SGKKQSKVIK
0701: STRMLAIDCE MVTCKGGSEA VVRVAAVDRD LKVVLDKFVK PSLPVIDYKT EITGVTAEDL EKATLSVADI QKKLRRFLSK GTILVGHGLH NDLQVLKVDH
0801: ARVIDTSLVF NYTGKLSVLD EELRMEGAAH NCVHDAAAAM KLVLAVVEKG VETSFPPTEK MLEVEKTMQE AKKASLYLHR IPRNVPSQEL KGLITGDFKV
0901: EVKPPKNLGP YYSAEVVFSS QEEANQAFDN VDGDIVEEKM GLSQKMVEFK MMSSGSVSRL YIRKNVQDSE VSAKKRSNTE EIKVSSKRQK RENDAEEIRE
1001: ESVNHCSSRE SKCENHIKEI EELKENHRKE IEELKENHIK ETEELKEKLK AKEQLKEKLK AKDREVEAQD KMISNLKKKL KKK

Best Arabidopsis Sequence Match ( AT5G67250.1 )
(BLAST)

001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST

Arabidopsis Description

SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.