CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88253	Canola	cytosol	97.97	97.97
Bra009931.1-P	Field mustard	cytosol	97.66	97.66
CDY53337	Canola	cytosol	87.5	87.64
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	86.41	86.14
CDY19741	Canola	cytosol	82.97	86.06
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	60.31	60.03
KRH68483	Soybean	cytosol	58.59	58.5
KRG96764	Soybean	cytosol	57.66	57.57
PGSC0003DMT400063732	Potato	cytosol	53.28	53.2
Solyc01g099970.2.1	Tomato	extracellular	51.25	52.99
GSMUA_Achr6P20450_001	Banana	cytosol	50.94	49.39
Zm00001d041635_P002	Maize	cytosol	51.09	49.32
Os12t0552700-01	Rice	cytosol, peroxisome	28.59	49.06
KXG23663	Sorghum	cytosol	50.62	48.94
Zm00001d023825_P001	Maize	cytosol	50.31	48.79
GSMUA_Achr11P...	Banana	cytosol	50.0	48.78
TraesCS5A01G091800.2	Wheat	cytosol	49.53	47.96
TraesCS5B01G097800.2	Wheat	cytosol	49.38	47.81
TraesCS5D01G103900.3	Wheat	cytosol	49.53	47.6
Zm00001d048695_P001	Maize	cytosol	47.5	46.91
KXG29052	Sorghum	plastid	47.97	46.52
HORVU5Hr1G024060.1	Barley	cytosol, plastid	49.53	37.6
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	37.03	35.06
CDX80753	Canola	endoplasmic reticulum	37.03	35.06
CDX88014	Canola	cytosol	17.66	27.9
CDY46953	Canola	cytosol	17.66	27.49
CDY40798	Canola	cytosol	17.19	26.76
CDY06032	Canola	cytosol	14.53	26.35
CDX71945	Canola	cytosol	14.38	26.06
CDY09760	Canola	cytosol	24.22	24.72
CDX90588	Canola	cytosol	24.22	24.64
CDY28039	Canola	cytosol	14.69	24.1
CDY35942	Canola	cytosol	14.38	23.29
CDX88336	Canola	cytosol	11.72	23.15
CDX87549	Canola	cytosol	12.03	21.69
CDY35358	Canola	cytosol	20.62	21.19
CDX76980	Canola	cytosol	19.69	21.04
CDX79184	Canola	cytosol	11.72	20.89
CDX68575	Canola	cytosol	16.56	20.74
CDY25663	Canola	plastid	16.56	20.62
CDX88173	Canola	cytosol	20.0	20.58
CDX83114	Canola	cytosol	15.94	20.52
CDY58588	Canola	extracellular	4.22	20.45
CDX87090	Canola	cytosol	19.69	20.45
CDY43846	Canola	plastid	16.41	20.43
CDX68067	Canola	cytosol	11.41	20.33
CDY67973	Canola	plasma membrane	11.41	20.17
CDX96592	Canola	cytosol	11.41	20.17
CDX80503	Canola	cytosol	19.38	19.97
CDY19807	Canola	cytosol	19.22	19.97
CDY45764	Canola	cytosol, peroxisome, plastid	17.97	19.73
CDY29091	Canola	plastid	5.31	19.65
CDY18646	Canola	cytosol	15.78	19.27
CDX81326	Canola	cytosol	15.62	19.08
CDY58589	Canola	extracellular	3.75	18.32
CDY12824	Canola	nucleus	16.25	9.54
CDY01426	Canola	cytosol	16.09	9.51

Protein Annotations

EnsemblPlants:CDX80608	EnsemblPlantsGene:GSBRNA2T00133737001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44309
PANTHER:PTHR44309:SF2	PFAM:PF13516	ProteinID:CDX80608	ProteinID:CDX80608.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0004EE1418	MapMan:35.1	:	:	:

Description

BnaC07g28360D

Coordinates

chrLK031821:+:1644282..1646956

Molecular Weight (calculated)

70530.4 Da

IEP (calculated)

8.154

GRAVY (calculated)

0.136

Length

640 amino acids

Sequence
(BLAST)

001: MSHSILSALS EDLLVRVYGF LDPPCRKTWR LVSREFHRVD SLSRTSIRIL RVEFLPALLF KYPNLSSLDL SVCPKLDDDA VLRIALDGAV STSRLKSLNL
101: SRATAVRARG LETLARLCRA LERVDVSHCW AFGDREAAAL SVAAGLRELK MDKCLSLSDV GLARIVVGCS KLNKISLKWC MEISDLGIDL LCKKCKDLKS
201: LDVSYLKITN DSVRSIALLP KLEVLDMVSC PLIDDAGLHY LENGSPSLKE IDVTRCDRVS SSSLISIVKG HPDLQHLKAS HCISEISASF LHNIKALKHL
301: KTLWIDGARV SDSSLLTLTS SCRALTELGV SRCLDVTDIG MMGLARNCSN LKALNLACCG FVTDAAISAV AQSCLNLESL QLESCHLITE KGLQSLGCYS
401: KRLQELDLTD CDGVNDRGLE YISKCSNLIR LKLGLCANIS DKGIFHIGSK CSKLLELDLY RCAGFGDDGL AAISRGCKSL NRLILSYCGE LTDAGAEKIR
501: QLEHLTHLEL RGIKNITGTG LSAIARGCKK LAYLDLKQCE NIDDSGFWAL AYFSRNLRQI NLCNCSVSDT ALCMLMSNLS RVQDVDLVHL NRVTVEGFEF
601: ALRACCNRLK KLKLLAPLRF LLSSELLEVL HARGCRIRWD

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.