Factsheet for Solyc01g099970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
plastid 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063732	Potato	cytosol	95.31	92.04
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	63.49	61.12
KRH68483	Soybean	cytosol	59.29	57.25
KRG96764	Soybean	cytosol	58.64	56.63
CDY19741	Canola	cytosol	52.18	52.35
Bra036607.1-P	Field mustard	cytosol	53.8	52.11
CDY53337	Canola	cytosol	53.47	51.8
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	53.63	51.71
CDX80608	Canola	cytosol	52.99	51.25
CDX88253	Canola	cytosol	52.67	50.94
Bra009931.1-P	Field mustard	cytosol	52.5	50.78
GSMUA_Achr6P20450_001	Banana	cytosol	49.11	46.06
GSMUA_Achr11P...	Banana	cytosol	48.63	45.88
Zm00001d023825_P001	Maize	cytosol	48.47	45.45
Zm00001d041635_P002	Maize	cytosol	48.47	45.25
KXG23663	Sorghum	cytosol	48.14	45.02
TraesCS5A01G091800.2	Wheat	cytosol	47.82	44.78
TraesCS5B01G097800.2	Wheat	cytosol	47.66	44.63
TraesCS5D01G103900.3	Wheat	cytosol	47.82	44.44
Zm00001d048695_P001	Maize	cytosol	45.88	43.83
Os12t0552700-01	Rice	cytosol, peroxisome	26.33	43.7
KXG29052	Sorghum	plastid	45.56	42.73
HORVU5Hr1G024060.1	Barley	cytosol, plastid	47.5	34.88
Solyc10g076290.1.1	Tomato	cytosol	37.8	34.67
Solyc04g008980.2.1	Tomato	cytosol	19.71	29.05
Solyc06g030620.1.1	Tomato	cytosol	7.59	23.38
Solyc06g054440.2.1	Tomato	mitochondrion	19.87	22.99
Solyc06g005380.2.1	Tomato	cytosol	12.6	22.54
Solyc12g009560.1.1	Tomato	cytosol	22.94	22.29
Solyc06g007680.1.1	Tomato	cytosol	14.22	22.0
Solyc06g030610.1.1	Tomato	cytosol	9.53	21.53
Solyc04g063380.2.1	Tomato	cytosol	12.12	20.6
Solyc04g078490.1.1	Tomato	cytosol	17.77	20.6
Solyc08g060810.2.1	Tomato	plastid	21.97	20.45
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	20.84	20.12
Solyc02g092990.1.1	Tomato	plastid	16.96	19.09
Solyc06g049010.1.1	Tomato	plastid	19.06	19.03
Solyc03g044220.1.1	Tomato	cytosol	15.99	18.03

Protein Annotations

EnsemblPlants:Solyc01g099970.2.1	EnsemblPlantsGene:Solyc01g099970.2	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44309	PANTHER:PTHR44309:SF2	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI0002769133	UniProt:K4B131	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1:-:90057375..90063571

Molecular Weight (calculated)

68575.4 Da

IEP (calculated)

7.762

GRAVY (calculated)

0.187

Length

619 amino acids

Sequence
(BLAST)

001: MDSALLLSVL NEDLLIRILS FITHDSDRKA FRLVCKAFLR VDSFHRTHLR ILRPEFITTL FSKFPRIYSL DLSVCPQIDD GAVSMLLGYG LPDWSRRLTR
101: LVLSRTTGLK SAGLEMFMKS CPVLESIDVS YCWGFGDREA AALSCGGSLR DVKLDRCLGL TDVGLAKIAI GCQCLEKLSL KWCIEITDLG IDFLSKKCTQ
201: LMQLDISYLK VTSVSLHSIS SMEKLKLLTM VGCSIVDDEG LHHLGKGCPS LQALDVSRCD RLSSSALAFL INGHPSMLQV YASHCFHEFP TEVIQGLKDL
301: KNLKTLILDG APVSESFFKI INFNCKYLVE IGLGKCKGVT DKGILQLVSG DSCRSVLCLK LECCNLLTEK SLYHLGLHCS LLEELDLTDC FGVNDTGLYY
401: LSKCTKLICL KLGLCTNITE KGLYCVARNC SEIRELDLYR CNGIGDDGLY ALSSGCKRMQ KLNFSYCSEV TDRGLECLSH LPELSDLEMR SLLNVTGTGL
501: TALAMGCKKL AELDVKDCTS IDDSGFMALA YYSRNLQQIN LSHCAISDVG LCMVMGNLTR LQDAKLVNLH NVSTNGFEVA LRASGVRLKK VKLIASLRLH
601: LTPDIVKTLR ARGCRIRWD

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.