Factsheet for Solyc06g054440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079115	Potato	cytosol	96.82	85.34
KRH02152	Soybean	cytosol	70.84	64.9
VIT_05s0020g02400.t01	Wine grape	cytosol	73.64	64.48
KRH20947	Soybean	cytosol, nucleus, peroxisome	70.47	62.11
AT4G15475.1	Thale cress	cytosol	66.36	58.2
KRH11333	Soybean	cytosol	41.68	57.03
CDY09760	Canola	cytosol	65.61	55.98
CDX90588	Canola	cytosol	65.61	55.8
Bra012785.1-P	Field mustard	cytosol	65.05	55.41
GSMUA_Achr3P22880_001	Banana	cytosol	62.43	52.19
KRH50979	Soybean	cytosol	33.08	50.43
Zm00001d007640_P001	Maize	cytosol	49.91	42.52
TraesCS4D01G148000.1	Wheat	cytosol	49.16	42.08
EES08900	Sorghum	cytosol	49.35	41.57
TraesCS4A01G142500.3	Wheat	plastid	45.61	38.79
Os11t0641200-01	Rice	cytosol	22.62	33.8
Os10t0148800-01	Rice	cytosol	26.36	28.31
Solyc04g008980.2.1	Tomato	cytosol	17.01	21.67
Solyc06g005380.2.1	Tomato	cytosol	13.64	21.1
Solyc10g076290.1.1	Tomato	cytosol	26.17	20.74
Solyc01g099970.2.1	Tomato	extracellular	22.99	19.87
Solyc04g063380.2.1	Tomato	cytosol	13.46	19.78
Solyc12g009560.1.1	Tomato	cytosol	22.99	19.31
Solyc08g060810.2.1	Tomato	plastid	23.93	19.25
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	22.99	19.19
Solyc06g007680.1.1	Tomato	cytosol	14.02	18.75
Solyc06g049010.1.1	Tomato	plastid	21.5	18.55
Solyc04g078490.1.1	Tomato	cytosol	18.32	18.35
Solyc06g030620.1.1	Tomato	cytosol	6.73	17.91
Solyc02g092990.1.1	Tomato	plastid	17.76	17.27
Solyc03g044220.1.1	Tomato	cytosol	16.82	16.39
Solyc06g030610.1.1	Tomato	cytosol	8.04	15.69

Protein Annotations

EnsemblPlants:Solyc06g054440.2.1	EnsemblPlantsGene:Solyc06g054440.2	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR45517
PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0002765B7A	UniProt:K4C6D0
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:37211199..37216894

Molecular Weight (calculated)

57359.0 Da

IEP (calculated)

7.191

GRAVY (calculated)

0.255

Length

535 amino acids

Sequence
(BLAST)

001: MGYAFFKFVV PKKHFLKGRR RGTDHSVISA LKIHSLAETN GTEDNETESY CLSDAGLAAV AAGFSKLEKL SLIWCSNVTH VGLRSIAEKC IFLKSLDLQG
101: CYVGDQGLAA VGEFSKQLED LNLRFCEGLT DAGFIKLVDG SGKTLKSISL AACAKVTDTS LEAVGSHCRS LESLSLDSEC IHDKGVLAVA QGCPQLKVLK
201: LQCVNVTDGA LQGVGTCCLS LELLALYSFQ IFTDKSLCAI GKGCKRLKSL TLNDCTFLSD KGLEAVAVGC TGLTHLEVNG CHNIGTYGLE SIARSCTHLS
301: ELALLYCQRI GNFALSEIGK GCKFLQALHL VDCASIGDEA ICSIARGCCN LKRLHIRRCY EVGNKGIIAV GENCKFLTDL SLRFCDRVGD EALVAIGEGC
401: SLHHLNVSGC HQIGDAGIIA IARGCPELSY LDVSVLQDLG DMAMVELGEG CPLLRDIVLS HCRQITDVGL SYIANRCTLL ETSHMVYCPG ITAAGVATMI
501: TSCTNIKKVL VEKWKVSPRT KRRAGSIISY LCVDL

Best Arabidopsis Sequence Match ( AT4G15475.1 )
(BLAST)

001: MRGHDRINNC LPEELILEIF RRLESKPNRD ACSLVCKRWL SLERFSRTTL RIGASFSPDD FISLLSRRFL YITSIHVDER ISVSLPSLSP SPKRKRGRDS
101: SSPSSSKRKK LTDKTHSGAE NVESSSLTDT GLTALANGFP RIENLSLIWC PNVSSVGLCS LAQKCTSLKS LDLQGCYVGD QGLAAVGKFC KQLEELNLRF
201: CEGLTDVGVI DLVVGCSKSL KSIGVAASAK ITDLSLEAVG SHCKLLEVLY LDSEYIHDKG LIAVAQGCHR LKNLKLQCVS VTDVAFAAVG ELCTSLERLA
301: LYSFQHFTDK GMRAIGKGSK KLKDLTLSDC YFVSCKGLEA IAHGCKELER VEINGCHNIG TRGIEAIGKS CPRLKELALL YCQRIGNSAL QEIGKGCKSL
401: EILHLVDCSG IGDIAMCSIA KGCRNLKKLH IRRCYEIGNK GIISIGKHCK SLTELSLRFC DKVGNKALIA IGKGCSLQQL NVSGCNQISD AGITAIARGC
501: PQLTHLDISV LQNIGDMPLA ELGEGCPMLK DLVLSHCHHI TDNGLNHLVQ KCKLLETCHM VYCPGITSAG VATVVSSCPH IKKVLIEKWK VTERTTRRAG
601: SVISYLCMDL

Arabidopsis Description

FBL4F-box/LRR-repeat protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.