Factsheet for VIT_05s0020g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02152	Soybean	cytosol	73.0	76.37
PGSC0003DMT400079115	Potato	cytosol	75.12	75.62
KRH20947	Soybean	cytosol, nucleus, peroxisome	74.3	74.79
Solyc06g054440.2.1	Tomato	mitochondrion	64.48	73.64
KRH11333	Soybean	cytosol	45.5	71.1
AT4G15475.1	Thale cress	cytosol	67.43	67.54
KRH50979	Soybean	cytosol	37.64	65.53
CDY09760	Canola	cytosol	65.14	63.48
CDX90588	Canola	cytosol	65.14	63.27
Bra012785.1-P	Field mustard	cytosol	64.98	63.22
GSMUA_Achr3P22880_001	Banana	cytosol	63.83	60.94
TraesCS4D01G148000.1	Wheat	cytosol	51.88	50.72
Zm00001d007640_P001	Maize	cytosol	51.39	50.0
EES08900	Sorghum	cytosol	50.74	48.82
TraesCS4A01G142500.3	Wheat	plastid	47.95	46.58
Os11t0641200-01	Rice	cytosol	26.19	44.69
Os10t0148800-01	Rice	cytosol	29.95	36.75
VIT_10s0071g00310.t01	Wine grape	cytosol	20.79	30.75
VIT_08s0007g07030.t01	Wine grape	cytosol	14.57	25.43
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	26.19	24.88
VIT_06s0004g07520.t01	Wine grape	cytosol	26.68	24.62
VIT_08s0058g00700.t01	Wine grape	cytosol	26.19	24.13
VIT_04s0008g05470.t01	Wine grape	cytosol	26.19	23.99
VIT_18s0001g09940.t01	Wine grape	plastid	19.8	22.37
VIT_07s0129g01110.t01	Wine grape	plastid	20.46	22.2
VIT_11s0016g05410.t01	Wine grape	cytosol	23.57	21.72
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	18.0	20.45
VIT_18s0001g15010.t01	Wine grape	mitochondrion	14.24	20.33

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100254543	wikigene:100254543	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CBI26158
ProteinID:CBI26158.3	UniProt:D7T6N7	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN595749	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100254543
wikigene:LOC100254543	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516
PANTHER:PTHR45517	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI00015C7FA4
ArrayExpress:VIT_05s0020g02400	EnsemblPlantsGene:VIT_05s0020g02400	EnsemblPlants:VIT_05s0020g02400.t01	unigene:Vvi.16008	RefSeq:XP_002279087	RefSeq:XP_002279087.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:4088417..4095017

Molecular Weight (calculated)

66054.8 Da

IEP (calculated)

7.662

GRAVY (calculated)

0.165

Length

611 amino acids

Sequence
(BLAST)

001: MKGHDLINSY LPDELIIEIF RHMHSKSSRD ACALVCKRWL ALERNSRRTL RIGASGSPDS FVKLLARRFV NVKNLYVDER LSVSHPVQLG RRRGGSQSTL
101: SSLNLHYMIE RGESDDSELE SNCFSDAGLI ALGEAFTKLK KLSLIWCSNV TSMGLQSFAG KCRSLRSLDL QGCYVGDQGL AAVGECCKEL QDLNLRFCEG
201: LTDKGLVELA IGCGKSLKVL GIAACAKITD ISLEAVGSHC RSLETLSLDS EFIHNEGVLA VAEGCRLLKV LKLLCINVTD EALEAVGTCC LSLEVLALYS
301: FQKFTDRSLS AIGKGCKKLK NLILSDCYFL SDKGLEAIAT GCSELIHLEV NGCHNIGTLG LASVGKSCLR LTELALLYCQ RIGDNALLEI GRGCKFLQAL
401: HLVDCSSIGD DAICGIANGC RNLKKLHIRR CYEIGNKGIV AVGENCKSLK DLSLRFCDRV GDDALIAIGQ GCSLNHLNVS GCHQIGDAGI IAIARGCPEL
501: SYLDVSVLQN LGDMAMAEIG EGCPSLKDIV LSHCRQITDV GLAHLVKKCT MLETCHMVYC PGITTAGVAT VVSTCPNIKK VLVEKSKVSE RTRRRAGSVI
601: SYICVDLSIP H

Best Arabidopsis Sequence Match ( AT4G15475.1 )
(BLAST)

001: MRGHDRINNC LPEELILEIF RRLESKPNRD ACSLVCKRWL SLERFSRTTL RIGASFSPDD FISLLSRRFL YITSIHVDER ISVSLPSLSP SPKRKRGRDS
101: SSPSSSKRKK LTDKTHSGAE NVESSSLTDT GLTALANGFP RIENLSLIWC PNVSSVGLCS LAQKCTSLKS LDLQGCYVGD QGLAAVGKFC KQLEELNLRF
201: CEGLTDVGVI DLVVGCSKSL KSIGVAASAK ITDLSLEAVG SHCKLLEVLY LDSEYIHDKG LIAVAQGCHR LKNLKLQCVS VTDVAFAAVG ELCTSLERLA
301: LYSFQHFTDK GMRAIGKGSK KLKDLTLSDC YFVSCKGLEA IAHGCKELER VEINGCHNIG TRGIEAIGKS CPRLKELALL YCQRIGNSAL QEIGKGCKSL
401: EILHLVDCSG IGDIAMCSIA KGCRNLKKLH IRRCYEIGNK GIISIGKHCK SLTELSLRFC DKVGNKALIA IGKGCSLQQL NVSGCNQISD AGITAIARGC
501: PQLTHLDISV LQNIGDMPLA ELGEGCPMLK DLVLSHCHHI TDNGLNHLVQ KCKLLETCHM VYCPGITSAG VATVVSSCPH IKKVLIEKWK VTERTTRRAG
601: SVISYLCMDL

Arabidopsis Description

FBL4F-box/LRR-repeat protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.