Factsheet for VIT_18s0001g09940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078490.1.1	Tomato	cytosol	70.79	71.72
KRH15408	Soybean	plastid	71.72	70.67
KRH05631	Soybean	plastid	70.06	67.32
AT1G47056.1	Thale cress	cytosol, plastid	61.18	63.9
Bra032213.1-P	Field mustard	plastid	60.07	63.23
CDY43846	Canola	plastid	60.07	63.23
CDY25663	Canola	plastid	59.52	62.65
PGSC0003DMT400008648	Potato	cytosol	18.48	59.88
GSMUA_Achr3P28280_001	Banana	plastid	54.16	59.43
VIT_07s0129g01110.t01	Wine grape	plastid	61.18	58.79
AT4G07400.1	Thale cress	nucleus	59.52	58.12
GSMUA_Achr9P22570_001	Banana	plastid	45.84	56.36
GSMUA_Achr4P12920_001	Banana	plastid	52.87	55.97
GSMUA_Achr2P05250_001	Banana	cytosol	48.06	53.5
OQU89081	Sorghum	cytosol	50.28	51.81
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	50.28	51.61
TraesCS5B01G158800.1	Wheat	plastid	50.28	51.61
TraesCS5A01G161400.1	Wheat	cytosol, plastid	50.28	51.61
GSMUA_Achr9P11380_001	Banana	cytosol	42.7	51.56
Zm00001d019677_P001	Maize	cytosol	49.35	50.86
GSMUA_Achr8P15580_001	Banana	cytosol	37.89	50.25
PGSC0003DMT400091765	Potato	cytosol	65.43	50.14
HORVU5Hr1G050420.1	Barley	plastid	50.28	49.28
Os04t0505700-01	Rice	cytosol, mitochondrion	37.52	48.92
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	39.74	48.75
KXG26667	Sorghum	plastid	41.77	48.29
Zm00001d003103_P001	Maize	plastid	46.21	48.08
Zm00001d025812_P001	Maize	plastid	46.58	46.15
Zm00001d025808_P001	Maize	plastid	46.21	45.79
TraesCS2A01G359900.1	Wheat	cytosol	44.55	44.55
HORVU0Hr1G005070.1	Barley	plastid	44.18	42.83
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	37.34	37.55
GSMUA_Achr9P18840_001	Banana	plastid	50.28	37.26
VIT_10s0071g00310.t01	Wine grape	cytosol	17.74	23.24
VIT_05s0020g02400.t01	Wine grape	cytosol	22.37	19.8
VIT_04s0008g05470.t01	Wine grape	cytosol	24.21	19.64
VIT_08s0007g07030.t01	Wine grape	cytosol	12.2	18.86
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	22.37	18.82
VIT_11s0016g05410.t01	Wine grape	cytosol	22.74	18.55
VIT_06s0004g07520.t01	Wine grape	cytosol	22.55	18.43
VIT_08s0058g00700.t01	Wine grape	cytosol	20.89	17.04
VIT_18s0001g15010.t01	Wine grape	mitochondrion	11.83	14.95
Zm00001d037295_P001	Maize	mitochondrion	6.47	14.34
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.55	13.51
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.55	12.88

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100259063	wikigene:100259063	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	ProteinID:CCB45806
ProteinID:CCB45806.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6GZY5	EMBL:FN595227	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100259063	wikigene:LOC100259063
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	TIGR:TC61209	TIGR:TC62612	UniParc:UPI00015C7B9C	ArrayExpress:VIT_18s0001g09940
EnsemblPlantsGene:VIT_18s0001g09940	EnsemblPlants:VIT_18s0001g09940.t01	unigene:Vvi.8792	RefSeq:XP_002284998	RefSeq:XP_002284998.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:8334491..8336451

Molecular Weight (calculated)

58198.3 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.108

Length

541 amino acids

Sequence
(BLAST)

001: MGQSASTSAI SSGSSRRGSN HPHRSRSKSM VQIPSMQVEE NVQFRQIDED LDYISDLPDE CLACIFQSLG SGDRKQCSLV CRRWLRIEGQ TRHRLSLNAH
101: SDLLTVVPSL FSRFDAVTKL ALKCDRRSVS IGDDALILIS LGCRNLTRLK LRACRELTDA GMGVFAKNCK GLKKLSCGSC TFGAKGMSAV LDNCSALEEL
201: SVKRLRGISD GSAVDQIGPG VAASSLKTIC LKEQYNGQCF WPLIIGAKNL RTLKLFRCSG DCDNLLQLVA NRTTSMVEIH LERLQVSDLG LVAISHFLDL
301: EILHLVKTSE CTNAGLVSVA ERCKLLRKLH IDGWKANRIG DEGLSAVAKC CPNLQELVLI GVNPTKLSLE MLAANCQNLE RLALCASDTV GDAEISCIAA
401: KCLALKKLCI KSCPVSDQGM RALACGCPNL VKVKVKKCRA VTYEGADGLR ASRESLAVNL DTGETEHQDA SASDGGAQEN AVELPPLASQ NGAANIASSS
501: SGRSNSLKAR LGLLTGRNLV ASTLRRWTSS NSSSRGNQRS N

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.