CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05631	Soybean	plastid	91.07	88.81
VIT_18s0001g09940.t01	Wine grape	plastid	70.67	71.72
Solyc04g078490.1.1	Tomato	cytosol	67.58	69.48
AT1G47056.1	Thale cress	cytosol, plastid	60.84	64.48
Bra032213.1-P	Field mustard	plastid	58.47	62.45
CDY43846	Canola	plastid	58.47	62.45
CDY25663	Canola	plastid	58.29	62.26
PGSC0003DMT400008648	Potato	cytosol	18.4	60.48
GSMUA_Achr3P28280_001	Banana	plastid	53.92	60.04
AT4G07400.1	Thale cress	nucleus	58.29	57.76
GSMUA_Achr9P22570_001	Banana	plastid	45.36	56.59
KRH28425	Soybean	cytosol	53.73	56.08
GSMUA_Achr4P12920_001	Banana	plastid	51.37	55.19
KRH77049	Soybean	cytosol	52.46	55.17
GSMUA_Achr2P05250_001	Banana	cytosol	46.99	53.09
OQU89081	Sorghum	cytosol	49.36	51.62
GSMUA_Achr9P11380_001	Banana	cytosol	42.08	51.56
TraesCS5B01G158800.1	Wheat	plastid	49.0	51.04
TraesCS5A01G161400.1	Wheat	cytosol, plastid	49.0	51.04
GSMUA_Achr8P15580_001	Banana	cytosol	37.89	50.98
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	48.82	50.85
KRH04530	Soybean	cytosol	49.91	50.83
Zm00001d019677_P001	Maize	cytosol	48.27	50.48
KRH57971	Soybean	cytosol	50.09	49.2
PGSC0003DMT400091765	Potato	cytosol	63.02	49.01
HORVU5Hr1G050420.1	Barley	plastid	49.18	48.91
KRH52037	Soybean	cytosol	35.7	48.51
Os04t0505700-01	Rice	cytosol, mitochondrion	36.61	48.43
Zm00001d003103_P001	Maize	plastid	45.72	48.27
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	38.25	47.62
KXG26667	Sorghum	plastid	40.44	47.44
Zm00001d025812_P001	Maize	plastid	45.36	45.6
Zm00001d025808_P001	Maize	plastid	45.17	45.42
TraesCS2A01G359900.1	Wheat	cytosol	43.35	43.99
HORVU0Hr1G005070.1	Barley	plastid	43.17	42.47
GSMUA_Achr9P18840_001	Banana	plastid	50.09	37.67
KRH61346	Soybean	cytosol	32.6	25.64
KRH02152	Soybean	cytosol	22.77	21.4
KRH36149	Soybean	cytosol	16.03	21.0
KRG90608	Soybean	cytosol	15.85	20.81
KRH11333	Soybean	cytosol	14.75	20.72
KRH20947	Soybean	cytosol, nucleus, peroxisome	22.22	20.1
KRH05167	Soybean	cytosol	22.22	20.0
KRH15886	Soybean	cytosol	23.32	19.88
KRH61771	Soybean	cytosol	22.95	19.81
KRH52439	Soybean	cytosol, nucleus, peroxisome	22.59	19.44
KRH03688	Soybean	cytosol	22.59	19.41
KRH50979	Soybean	cytosol	12.39	19.37
KRH16153	Soybean	cytosol	8.74	19.35
KRH20255	Soybean	cytosol	22.4	19.25
KRH38032	Soybean	cytosol	13.11	19.05
KRH62989	Soybean	cytosol	22.4	18.92
KRH47976	Soybean	cytosol	13.11	18.56
KRH64574	Soybean	cytosol	10.38	17.76
KRH18090	Soybean	cytosol	11.84	17.33
KRH15905	Soybean	cytosol	11.48	16.98
KRH68483	Soybean	cytosol	19.49	16.69
KRG96764	Soybean	cytosol	19.49	16.69
KRH53355	Soybean	cytosol	11.29	16.67
KRH76059	Soybean	cytosol, nucleus, peroxisome	19.49	15.95
KRH65525	Soybean	cytosol, peroxisome, plastid	19.67	15.25
KRH17127	Soybean	cytosol	17.85	15.03
KRH72766	Soybean	cytosol	14.57	14.87
KRH04870	Soybean	cytosol	7.1	14.34
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.65	13.96
Zm00001d037295_P001	Maize	mitochondrion	6.01	13.52
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.46	12.88

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100788163	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02008590	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_14G086000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1M8Q6
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH15408	ProteinID:KRH15408	ProteinID:KRH15408.1
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PFscan:PS50181
PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI000233B6E4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:7633479..7636548

Molecular Weight (calculated)

58736.8 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.065

Length

549 amino acids

Sequence
(BLAST)

001: MGQSVSSAAV ASRRERDPGH LSVNTSKTRS TALITPMAGY SSGAGEDESE NRRGEAVTDE TTDYISDLPN ECLASVFQFL SSADRNRCSL VCRRWLQIEG
101: QSRHRLSLNA DEDLFPAIPS LFSRFDSVTK LALKCDRRSV SISDDALVLI SQRCPNLTRL KLRACRALTD AGMEAFAKNC KGLKKLSCGS CTFGSKGMNA
201: VLDNCAALEE LSVKRLRGIT DAAAAEPIGP GVAAASLKIV CLKELYNGQC FGTLILGAKN LKTLKLFRCS GDWDRLFQLM ADRVTNMVEV HLERLQISDV
301: GLQAIANFSS LEILHLVKTP ECSDIGLVAI ADRCKLLRKL HIDGWKANRI GDEGLIAVAK GCPNLLELVL IGVNPTKASL EMLASNCRNL ERLALCGSDS
401: VGDTEISCIA AKCVALKKLC IKSCPVSDQG MEALANGCPN LVKVKVKKCK GVTPEGGDWL RRTRGSVAVN LDTGEAELQE ASASDGGAQD NVVEFPQMPA
501: QIVAAAASAS SSTTRSSSFK LRLGLLSGRS LVASTFKRWS GGSTSARHG

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.