Factsheet for GSMUA_Achr2P05250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28280_001	Banana	plastid	57.82	57.0
GSMUA_Achr4P12920_001	Banana	plastid	57.2	54.4
GSMUA_Achr8P15580_001	Banana	cytosol	45.47	54.17
GSMUA_Achr9P22570_001	Banana	plastid	48.97	54.09
GSMUA_Achr9P11380_001	Banana	cytosol	47.33	51.34
PGSC0003DMT400008648	Potato	cytosol	17.28	50.3
GSMUA_Achr9P18840_001	Banana	plastid	74.28	49.45
VIT_18s0001g09940.t01	Wine grape	plastid	53.5	48.06
OQU89081	Sorghum	cytosol	51.85	48.0
TraesCS5A01G161400.1	Wheat	cytosol, plastid	51.23	47.25
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	51.03	47.06
TraesCS5B01G158800.1	Wheat	plastid	51.03	47.06
Solyc04g078490.1.1	Tomato	cytosol	51.65	47.0
KRH15408	Soybean	plastid	53.09	46.99
Bra032213.1-P	Field mustard	plastid	49.18	46.5
Zm00001d019677_P001	Maize	cytosol	50.21	46.48
CDY43846	Canola	plastid	48.97	46.3
CDY25663	Canola	plastid	48.97	46.3
KRH05631	Soybean	plastid	52.67	45.47
Solyc02g092990.1.1	Tomato	plastid	51.44	45.45
AT1G47056.1	Thale cress	cytosol, plastid	48.35	45.37
HORVU5Hr1G050420.1	Barley	plastid	51.44	45.29
PGSC0003DMT400064250	Potato	mitochondrion	51.03	45.09
AT5G67250.1	Thale cress	cytosol	48.35	44.59
PGSC0003DMT400053918	Potato	cytosol	49.79	44.08
Solyc03g044220.1.1	Tomato	cytosol	49.38	43.72
CDX81326	Canola	cytosol	46.91	43.51
CDY18646	Canola	cytosol	46.71	43.32
Bra037120.1-P	Field mustard	cytosol	46.71	43.16
VIT_07s0129g01110.t01	Wine grape	plastid	49.38	42.63
Bra029994.1-P	Field mustard	cytosol	44.65	42.47
KRH77049	Soybean	cytosol	45.06	41.95
CDX83114	Canola	cytosol	42.8	41.85
KRH28425	Soybean	cytosol	45.27	41.83
AT3G50080.1	Thale cress	cytosol	44.86	41.76
CDX68575	Canola	cytosol	43.83	41.68
AT4G07400.1	Thale cress	nucleus	46.91	41.16
KRH04530	Soybean	cytosol	42.39	38.22
KRH57971	Soybean	cytosol	43.21	37.57
KRH52037	Soybean	cytosol	30.45	36.63
PGSC0003DMT400091765	Potato	cytosol	48.97	33.71
CDY01426	Canola	cytosol	49.38	22.16
CDY12824	Canola	nucleus	48.97	21.83
GSMUA_Achr2P17760_001	Banana	cytosol	14.2	19.49
KRH61346	Soybean	cytosol	27.57	19.2
GSMUA_Achr8P28940_001	Banana	cytosol	14.4	18.42
GSMUA_Achr5P19410_001	Banana	cytosol	15.02	17.18
GSMUA_Achr10P...	Banana	cytosol	11.93	16.34
GSMUA_Achr6P18620_001	Banana	cytosol	12.14	16.08
GSMUA_Achr4P30680_001	Banana	cytosol	21.4	15.95
GSMUA_Achr3P22880_001	Banana	cytosol	20.78	15.78
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	20.99	15.6
GSMUA_Achr7P22290_001	Banana	cytosol	22.84	15.5
GSMUA_AchrUn_...	Banana	cytosol	11.73	15.49
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	21.19	15.42
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	22.63	15.41
GSMUA_Achr6P05220_001	Banana	cytosol	20.58	15.29
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	20.37	14.82
GSMUA_Achr6P20450_001	Banana	cytosol	19.75	14.55
GSMUA_Achr11P...	Banana	cytosol	19.34	14.33
GSMUA_Achr8P13910_001	Banana	mitochondrion	9.88	13.56

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G05250_001	EnsemblPlants:GSMUA_Achr2P05250_001	EnsemblPlants:GSMUA_Achr2T05250_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0S5B6
PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0002952271	SEG:seg	:	:	:

Description

F-box protein At1g47056 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05250_001]

Coordinates

chr2:-:10439829..10441424

Molecular Weight (calculated)

51292.8 Da

IEP (calculated)

7.572

GRAVY (calculated)

0.025

Length

486 amino acids

Sequence
(BLAST)

001: MGQSASSRLT DAPPAMGGVS LTRDYTAGLP DECLALVFQS LGSGDRKSCS LVCRRWLAVE SCSRRSLSLD ARAALSDLRA CRALTVAGME AIARHCPGLR
101: ELSVSSCTFG ARGIDVVLRG CPLLEDLSIK RLRGLHDPSA TADLVAGAAS LRSLCLEDLY NGQCFAPFIA GSPNLKTLKL IRCSGDWDPL LQDIAVKVPL
201: IVEIHLERLQ VTDSGLTALS GCIDLEILRL VKTPECTDAG LATIADRCHR LRKLHIDGWK ANSIGDVGLQ AVAQRCTGLG ELVLAGLDPT YRSLELIASN
301: CGSLERLALC GSETIGDAEV ACIASKCTSL KKLCIKECPV SDQGMEALAA GCPKLVKMTV KRCSGVTPDC ADRLVASRHG KLAVNLEVND GSTNDQQQEA
401: TEEGSALEEF GIAAAIGGSE LPRPLVDGVG SQGRWPGKKK RAGFFATRRN LVASALRRLS HGSSNSSHSP SVRGEGEPSA FSVSVV

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.