Factsheet for HORVU5Hr1G050420.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	93.3	97.72
TraesCS5B01G158800.1	Wheat	plastid	92.93	97.34
TraesCS5A01G161400.1	Wheat	cytosol, plastid	92.75	97.15
OQU89081	Sorghum	cytosol	78.08	82.1
Zm00001d019677_P001	Maize	cytosol	76.09	80.0
GSMUA_Achr2P05250_001	Banana	cytosol	45.29	51.44
VIT_18s0001g09940.t01	Wine grape	plastid	49.28	50.28
Solyc04g078490.1.1	Tomato	cytosol	48.55	50.19
KRH15408	Soybean	plastid	48.91	49.18
AT1G47056.1	Thale cress	cytosol, plastid	45.65	48.65
KRH05631	Soybean	plastid	48.91	47.96
CDY43846	Canola	plastid	44.57	47.86
Bra032213.1-P	Field mustard	plastid	44.57	47.86
CDY25663	Canola	plastid	44.38	47.67
CDY18646	Canola	cytosol	43.66	45.99
CDX81326	Canola	cytosol	43.66	45.99
AT5G67250.1	Thale cress	cytosol	43.66	45.73
CDX83114	Canola	cytosol	41.12	45.67
Bra037120.1-P	Field mustard	cytosol	43.48	45.63
VIT_07s0129g01110.t01	Wine grape	plastid	46.38	45.47
Solyc02g092990.1.1	Tomato	plastid	45.29	45.45
PGSC0003DMT400064250	Potato	mitochondrion	45.29	45.45
Bra029994.1-P	Field mustard	cytosol	41.3	44.62
PGSC0003DMT400053918	Potato	cytosol	44.2	44.44
AT3G50080.1	Thale cress	cytosol	42.03	44.44
CDX68575	Canola	cytosol	41.12	44.42
Solyc03g044220.1.1	Tomato	cytosol	44.02	44.26
KRH28425	Soybean	cytosol	42.03	44.11
KRH04530	Soybean	cytosol	42.21	43.23
KRH77049	Soybean	cytosol	40.76	43.1
AT4G07400.1	Thale cress	nucleus	42.39	42.24
KRH57971	Soybean	cytosol	42.75	42.22
PGSC0003DMT400008648	Potato	cytosol	12.68	41.92
HORVU0Hr1G005070.1	Barley	plastid	42.21	41.76
KRH52037	Soybean	cytosol	27.72	37.87
PGSC0003DMT400091765	Potato	cytosol	46.56	36.4
GSMUA_Achr9P18840_001	Banana	plastid	46.74	35.34
CDY01426	Canola	cytosol	44.75	22.81
CDY12824	Canola	nucleus	44.75	22.66
HORVU6Hr1G059950.1	Barley	cytosol	15.94	21.1
HORVU3Hr1G012530.12	Barley	cytosol	12.86	20.23
KRH61346	Soybean	cytosol	24.46	19.34
HORVU1Hr1G065030.2	Barley	cytosol	12.68	18.47
HORVU4Hr1G014630.1	Barley	cytosol	12.5	17.88
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	8.33	17.29
HORVU3Hr1G091200.4	Barley	cytosol	13.04	17.14
HORVU6Hr1G038430.3	Barley	plastid	20.11	17.0
HORVU7Hr1G090240.1	Barley	cytosol	16.49	16.88
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	20.29	16.59
HORVU5Hr1G029670.1	Barley	mitochondrion	13.59	14.62
HORVU5Hr1G000950.4	Barley	plastid	10.51	12.98
HORVU5Hr1G024060.1	Barley	cytosol, plastid	19.02	12.46

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A287R6E0	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU5Hr1G050420	EnsemblPlants:HORVU5Hr1G050420.1	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000B47F638	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:+:391817045..391819064

Molecular Weight (calculated)

58337.7 Da

IEP (calculated)

8.825

GRAVY (calculated)

-0.022

Length

552 amino acids

Sequence
(BLAST)

001: PTPTPPSVPS ASPVDPPPPP PSPMGQCPSA PRYHHHRKPP PPPPSPTAQA ASPRFCSAAA AEDAAEAAEA DYTSDLPEEL LAVVFGLLGS GDRKRCSLVC
101: RRWLATEASS RLRLALDARA PLLAAAPAIL ARFSAVSKLA LKCDRRAESV GDPTLALVAH RLGPGLRRLK LRSVRAVTDH GVAALAAAAV NLRKLSVGSC
201: TFGAKGIEAV LRSCPQLEEL SVKRLRGLAD SEPITVSSPR LQSLALKELY NGQCFSCLIT HSPNLKTLKI IRCSGDWDPV LQAIPQGALL AELHLEKLQV
301: SDLGVAALCG LEVLYLAKAP EVTDIGLAAL ATKSPRLRKL HVDGWKANRI GDRGLATVAQ KCAALQELVL IGVNLTSASL ELIAANCPTL ERLALCGSDT
401: FGDAEISCVA TKCASLRKLC IKACPVSDAG MDKLAAGCPR LVKVKVKKCR RVTFECAERL RASRHGALAV NFDTPGGAGE LQDASVDESG VLENAGSDVV
501: QDDFDDQIGV PDLLCGTSGR PSGWKARMGA LMTRSLSVSM FRRRPRRSPH SS

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.