Factsheet for Bra037120.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67250.1	Bra003735.1-P	AT1G75950.1	12169662
AT5G67250.1	Bra008231.1-P	AT1G75950.1	12169662
AT5G67250.1	Bra015801.1-P	AT1G75950.1	12169662
AT5G67250.1	Bra003735.1-P	AT1G75950.1	21798944
AT5G67250.1	Bra008231.1-P	AT1G75950.1	21798944
AT5G67250.1	Bra015801.1-P	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18646	Canola	cytosol	97.72	98.09
AT5G67250.1	Thale cress	cytosol	85.74	85.58
Bra029994.1-P	Field mustard	cytosol	69.2	71.23
KRH77049	Soybean	cytosol	55.7	56.13
KRH28425	Soybean	cytosol	55.89	55.89
KRH04530	Soybean	cytosol	55.7	54.36
KRH57971	Soybean	cytosol	56.46	53.13
Solyc02g092990.1.1	Tomato	plastid	55.51	53.09
PGSC0003DMT400064250	Potato	mitochondrion	55.13	52.73
VIT_07s0129g01110.t01	Wine grape	plastid	56.27	52.58
PGSC0003DMT400053918	Potato	cytosol	54.56	52.28
Solyc03g044220.1.1	Tomato	cytosol	54.37	52.09
Bra032213.1-P	Field mustard	plastid	49.05	50.19
GSMUA_Achr3P28280_001	Banana	plastid	46.58	49.7
GSMUA_Achr9P11380_001	Banana	cytosol	42.02	49.33
GSMUA_Achr8P15580_001	Banana	cytosol	37.64	48.53
OQU89081	Sorghum	cytosol	47.15	47.24
GSMUA_Achr4P12920_001	Banana	plastid	45.44	46.77
GSMUA_Achr2P05250_001	Banana	cytosol	43.16	46.71
GSMUA_Achr9P22570_001	Banana	plastid	38.78	46.36
TraesCS5A01G161400.1	Wheat	cytosol, plastid	45.82	45.73
Zm00001d019677_P001	Maize	cytosol	45.63	45.71
TraesCS5B01G158800.1	Wheat	plastid	45.63	45.54
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	45.63	45.54
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	37.45	44.67
Os04t0505700-01	Rice	cytosol, mitochondrion	34.98	44.34
HORVU5Hr1G050420.1	Barley	plastid	45.63	43.48
Zm00001d003103_P001	Maize	plastid	42.78	43.27
KXG26667	Sorghum	plastid	37.64	42.31
TraesCS2A01G359900.1	Wheat	cytosol	43.35	42.14
Zm00001d025808_P001	Maize	plastid	42.4	40.84
Zm00001d025812_P001	Maize	plastid	42.4	40.84
HORVU0Hr1G005070.1	Barley	plastid	42.78	40.32
GSMUA_Achr9P18840_001	Banana	plastid	47.91	34.52
Bra009671.1-P	Field mustard	cytosol	16.54	21.48
Bra029367.1-P	Field mustard	cytosol	16.54	21.17
Bra007401.1-P	Field mustard	cytosol	9.7	20.73
Bra029656.1-P	Field mustard	cytosol	13.69	18.23
Bra012785.1-P	Field mustard	cytosol	21.48	17.99
Bra009835.1-P	Field mustard	cytosol	20.91	17.68
Bra034254.1-P	Field mustard	cytosol	20.53	17.36
Bra003692.1-P	Field mustard	cytosol	11.79	17.27
Bra036542.1-P	Field mustard	cytosol	19.96	17.05
Bra015699.1-P	Field mustard	cytosol	11.41	16.95
Bra016422.1-P	Field mustard	cytosol	11.03	16.43
Bra009931.1-P	Field mustard	cytosol	19.58	16.09
Bra036607.1-P	Field mustard	cytosol	19.01	15.65
Bra005669.1-P	Field mustard	cytosol	18.25	14.37
Zm00001d037295_P001	Maize	mitochondrion	6.27	13.52
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.51	13.06
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.13	11.59

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra037120	EnsemblPlants:Bra037120.1	EnsemblPlants:Bra037120.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4F7Q9	PFAM:PF00646	PFAM:PF13516
PANTHER:PTHR44356	PANTHER:PTHR44356:SF3	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002541D2B
SEG:seg	:	:	:	:	:

Description

AT5G67250 (E=1e-223) SKIP2, VFB4 | SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2); ubiquitin-protein ligase

Coordinates

chrA09:-:4376802..4378382

Molecular Weight (calculated)

56896.8 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.103

Length

526 amino acids

Sequence
(BLAST)

001: MGQAPSSTAE STAREIDLRL TSPVIVAGRG ESMDSGNHPA ASDRDYTEDL PGECLAHVFQ YLGAGDRKRC SLVCKRWLFV DGQNRHRLSL DARDEISSFL
101: PSMFDRFDSV TKLALRCDRK SLSLSDEALV MISFRCSNLT RVKLRGCREI TDLGMVEFAK NCGNLKKLSV GSCNFGAEGV NAMLENCKAL EELSVKRLRG
201: IHEAPELVCS SSSLRSVCLK ELVNGQVFEP LVANTRTLKT LKIIRCLGDW DKVLKTIGEG DSSLSEIHLE RLQVSDFGLS AVSKCSKVET LHIVKTPECS
301: NYGLIDVAER CKLLRKLHID GWRTNRIGDE GLMAVAKNCL NLQELVLIGV NATHMSLAAI ASNCEKLERL ALCGSGTIGD TEIACIAKKC GALRKFCIKG
401: CAVSDLGIEA LAVGCPNLVK LKVKKCKVVT GEIGEWLRER RRTLVVCMDG DGSEATVAPE GEVETVVGEP RVGQAGGAAE VGSGNGGGSR LAMIRSKFGF
501: LGGRNLITCT FGRWSHNDND NGTSST

Best Arabidopsis Sequence Match ( AT5G67250.1 )
(BLAST)

001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST

Arabidopsis Description

SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.