Factsheet for Bra029367.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23340.1	Bra003735.1-P	AT1G75950.1	21798944
AT5G23340.1	Bra008231.1-P	AT1G75950.1	21798944
AT5G23340.1	Bra015801.1-P	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46953	Canola	cytosol	96.84	96.84
CDY40798	Canola	cytosol	95.13	95.13
AT5G23340.1	Thale cress	cytosol	88.32	89.63
Bra009671.1-P	Field mustard	cytosol	87.59	88.89
VIT_10s0071g00310.t01	Wine grape	cytosol	71.78	71.43
PGSC0003DMT400029999	Potato	cytosol	67.88	66.75
KRG90608	Soybean	cytosol	67.15	66.03
Solyc04g008980.2.1	Tomato	cytosol	67.4	65.95
KRH36149	Soybean	cytosol	66.67	65.39
GSMUA_Achr8P13910_001	Banana	mitochondrion	50.12	58.19
GSMUA_Achr5P19410_001	Banana	cytosol	59.37	57.41
TraesCS6D01G216400.1	Wheat	cytosol	57.18	56.35
TraesCS6B01G262900.1	Wheat	cytosol	57.18	56.35
TraesCS6A01G234100.2	Wheat	cytosol	56.93	56.12
HORVU6Hr1G059950.1	Barley	cytosol	56.45	55.64
Os02t0636400-01	Rice	cytosol	26.28	54.0
Zm00001d051219_P001	Maize	cytosol	54.74	53.96
KXG30697	Sorghum	cytosol	53.04	51.66
KRH16153	Soybean	cytosol	29.68	49.19
Bra003692.1-P	Field mustard	cytosol	17.76	20.33
Bra029656.1-P	Field mustard	cytosol	19.22	20.0
Bra016422.1-P	Field mustard	cytosol	17.03	19.83
Bra015699.1-P	Field mustard	cytosol	17.03	19.77
Bra012785.1-P	Field mustard	cytosol	28.95	18.95
Bra036607.1-P	Field mustard	cytosol	27.74	17.84
Bra029994.1-P	Field mustard	cytosol	22.14	17.81
Bra009931.1-P	Field mustard	cytosol	27.01	17.34
Bra032213.1-P	Field mustard	plastid	21.41	17.12
Bra005669.1-P	Field mustard	cytosol	27.25	16.77
Bra036542.1-P	Field mustard	cytosol	25.06	16.72
Bra037120.1-P	Field mustard	cytosol	21.17	16.54
Bra009835.1-P	Field mustard	cytosol	24.09	15.92
Bra007401.1-P	Field mustard	cytosol	9.49	15.85
Bra034254.1-P	Field mustard	cytosol	23.6	15.59

Protein Annotations

EnsemblPlants:Bra029367.1	EnsemblPlants:Bra029367.1-P	EnsemblPlantsGene:Bra029367	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR45191	PFAM:PF13516	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000254560D
UniProt:M4EKQ0	MapMan:35.1	:	:	:	:

Description

AT5G23340 (E=1e-211) | INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits to 3545 proteins in 210 species: Archae - 0; Bacteria - 454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses - 15; Other Eukaryotes - 1159 (source: NCBI BLink).

Coordinates

chrA02:-:25587831..25589767

Molecular Weight (calculated)

44897.7 Da

IEP (calculated)

7.917

GRAVY (calculated)

0.037

Length

411 amino acids

Sequence
(BLAST)

001: MASVCVNDAL TDDELRCVLS KLDRDKDKEV FSLVCKRWLH LQSTDRKKLA ARAGPHLLGR LAFRFTQIVE LDFSQSVSRS FYPGVTDSDL TVIAEGFRCL
101: RVLNLHNCKG ITDTGLASTG RCLSLLQFLD VSYCRKLSDK GLSAVAQGCH DLRTLHLAGC RLITNESLKQ LSKCCRGLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKTLDIN KCSNVGDAGV SSVAKACAYS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMILAHSC RDSLKNLRMD WCLNISDSSL
301: TCILKQCKNL EALDIGCCEE VTDNAFLDLG RGDVLGLKVL KVSNCPRITV KGIGKVLEKC KSLEYIDVRS LPHVTEVRCT EAGLEFPKCC KVNFSGSLTE
401: PDVLLGYSGL P

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.