Factsheet for TraesCS6B01G262900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G234100.2	Wheat	cytosol	98.32	98.32
TraesCS6D01G216400.1	Wheat	cytosol	98.08	98.08
HORVU6Hr1G059950.1	Barley	cytosol	94.72	94.72
Os02t0636400-01	Rice	cytosol	38.85	81.0
Zm00001d051219_P001	Maize	cytosol	80.34	80.34
KXG30697	Sorghum	cytosol	79.86	78.91
GSMUA_Achr5P19410_001	Banana	cytosol	64.51	63.29
GSMUA_Achr8P13910_001	Banana	mitochondrion	53.0	62.43
AT5G23340.1	Thale cress	cytosol	57.31	59.01
VIT_10s0071g00310.t01	Wine grape	cytosol	58.27	58.84
Bra009671.1-P	Field mustard	cytosol	55.88	57.53
CDY46953	Canola	cytosol	56.59	57.42
CDX88014	Canola	cytosol	55.64	57.28
CDY40798	Canola	cytosol	56.35	57.18
Bra029367.1-P	Field mustard	cytosol	56.35	57.18
PGSC0003DMT400029999	Potato	cytosol	55.4	55.26
Solyc04g008980.2.1	Tomato	cytosol	55.4	55.0
KRG90608	Soybean	cytosol	54.44	54.31
KRH36149	Soybean	cytosol	54.2	53.94
CDY45764	Canola	cytosol, peroxisome, plastid	56.35	40.31
CDY29091	Canola	plastid	16.31	39.31
KRH16153	Soybean	cytosol	22.54	37.9
TraesCS3B01G080300.1	Wheat	cytosol	17.51	20.8
TraesCS1B01G275600.1	Wheat	cytosol	18.47	20.32
TraesCS3B01G440600.2	Wheat	cytosol	18.47	20.21
TraesCS5B01G097800.2	Wheat	cytosol	30.7	19.36
TraesCS4B01G085300.2	Wheat	plastid	17.27	17.78
TraesCS5B01G149400.1	Wheat	mitochondrion	27.1	16.57
TraesCS5B01G158800.1	Wheat	plastid	20.62	16.32
TraesCS6B01G210700.1	Wheat	cytosol	24.46	15.72
TraesCS7B01G278800.1	Wheat	cytosol	23.5	15.15

Protein Annotations

EnsemblPlants:TraesCS6B01G262900.1	EnsemblPlantsGene:TraesCS6B01G262900	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR45191
PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	MapMan:35.1	:

Description

No Description!

Coordinates

chr6B:-:473086672..473088971

Molecular Weight (calculated)

45052.7 Da

IEP (calculated)

6.463

GRAVY (calculated)

0.091

Length

417 amino acids

Sequence
(BLAST)

001: MSASPSEGDE ALINEVLTDD ELRAVLTRLR PESERDAFGL VCRRWLRIQS SERRRLRARA GPSMLRRLAA RFPGILELDL SQSPSRSFYP GVIDGDLDVI
101: AGGFCNLRVL ALQNCKGITD VGMVKLGEGL QCLQTLDVSH CKKLSDKGLK VVASGCQKLR QLHIAGCRLI TDNLLHAVSK NCLNLEELGA AGCNSITDAG
201: ISALADGCHK MKSLDISKCN KVGDPGICKI AEVSSSSLVS LKLLDCSKVG NKSIYSLAKF CCNLETLIIG GCRDISDESI EALALACCSS LRILRMDWCL
301: KITDASLRSL LCNCKLLAAI DVGCCDQITD AAFQGMEANL FQSELRVLKI NNCVDLTVVG VSSVIESCKA LEYLDVRSCP QVTRQSCEEA GLQLPGGCKV
401: NFEGSLSESD PSVDRFF

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.