Factsheet for VIT_10s0071g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G23340.1	Thale cress	cytosol	72.64	74.07
Bra009671.1-P	Field mustard	cytosol	71.91	73.33
CDX88014	Canola	cytosol	71.67	73.09
PGSC0003DMT400029999	Potato	cytosol	72.88	72.01
Bra029367.1-P	Field mustard	cytosol	71.43	71.78
CDY40798	Canola	cytosol	71.19	71.53
CDY46953	Canola	cytosol	71.19	71.53
KRG90608	Soybean	cytosol	71.91	71.05
Solyc04g008980.2.1	Tomato	cytosol	71.67	70.48
KRH36149	Soybean	cytosol	71.43	70.41
GSMUA_Achr5P19410_001	Banana	cytosol	62.23	60.47
GSMUA_Achr8P13910_001	Banana	mitochondrion	51.82	60.45
TraesCS6B01G262900.1	Wheat	cytosol	58.84	58.27
TraesCS6A01G234100.2	Wheat	cytosol	58.6	58.03
TraesCS6D01G216400.1	Wheat	cytosol	58.6	58.03
HORVU6Hr1G059950.1	Barley	cytosol	57.38	56.83
Os02t0636400-01	Rice	cytosol	27.12	56.0
Zm00001d051219_P001	Maize	cytosol	56.17	55.64
KXG30697	Sorghum	cytosol	54.24	53.08
CDY45764	Canola	cytosol, peroxisome, plastid	72.16	51.11
KRH16153	Soybean	cytosol	29.06	48.39
CDY29091	Canola	plastid	19.13	45.66
VIT_05s0020g02400.t01	Wine grape	cytosol	30.75	20.79
VIT_08s0007g07030.t01	Wine grape	cytosol	16.95	20.0
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	30.99	19.91
VIT_06s0004g07520.t01	Wine grape	cytosol	29.06	18.13
VIT_18s0001g15010.t01	Wine grape	mitochondrion	18.64	17.99
VIT_08s0058g00700.t01	Wine grape	cytosol	28.57	17.8
VIT_18s0001g09940.t01	Wine grape	plastid	23.24	17.74
VIT_18s0072g00820.t01	Wine grape	cytosol, extracellular, peroxisome	23.0	17.66
VIT_04s0008g05470.t01	Wine grape	cytosol	25.91	16.04
VIT_07s0129g01110.t01	Wine grape	plastid	21.55	15.81
VIT_11s0016g05410.t01	Wine grape	cytosol	24.94	15.54

Protein Annotations

EntrezGene:100241300	wikigene:100241300	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB58882	ProteinID:CCB58882.1
UniProt:F6HW18	EMBL:FN596260	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100241300	wikigene:LOC100241300	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF13516	PANTHER:PTHR45191	SMART:SM00367	SUPFAM:SSF52047	TIGR:TC52549	TIGR:TC69618
UniParc:UPI00015CD03B	ArrayExpress:VIT_10s0071g00310	EnsemblPlantsGene:VIT_10s0071g00310	EnsemblPlants:VIT_10s0071g00310.t01	unigene:Vvi.7361	RefSeq:XP_002276047
RefSeq:XP_002276047.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:16611592..16614941

Molecular Weight (calculated)

44767.5 Da

IEP (calculated)

6.564

GRAVY (calculated)

0.144

Length

413 amino acids

Sequence
(BLAST)

001: MAGVEEASGV CINEALTDDE LRAVLAKLQS DKDKEVFGLV CKRWLHLQST ERKKLCARAG PLMLRKMAAR FSRLVELDLS QSISRSFYPG VTDSDLKVIA
101: DGFGCLRVLG LQHCRGITDV GLMAIGRNLS HLQSLDVSYC RKLTDKGLSA IAESCCDLRS LHLAGCRSVN DKVLEALSKN CHNLEELGLQ GCTYITDSGL
201: TFLVKGCQRM KFLDINKCSN ISDIGVCSVS ISCSCSLKTL KLLDCYKVGD ESVLSLAQFC KNLETLIIGG CRDISDESVK SLAIAACSHS LKNLRMDWCL
301: NISDLSLNCI FCNCRNLEAL DIGCCEEVTD AAFQGLNKGG SKLGLKVLKV SNCPKITVAG IGLLLDSCNS LEYLDVRSCP HVTEAGCDQA GLQFPECCKV
401: NFLGSLSEPD VLV

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.