CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23340.1	CDX68112	AT1G75950.1	21798944
AT5G23340.1	CDX73212	AT1G75950.1	21798944
AT5G23340.1	CDX80590	AT1G75950.1	21798944
AT5G23340.1	CDX85931	AT1G75950.1	21798944
AT5G23340.1	CDX87650	AT1G75950.1	21798944
AT5G23340.1	CDY13521	AT1G75950.1	21798944
AT5G23340.1	CDY39073	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009671.1-P	Field mustard	cytosol	99.75	99.75
AT5G23340.1	Thale cress	cytosol	91.85	91.85
CDY40798	Canola	cytosol	89.88	88.56
CDY46953	Canola	cytosol	88.4	87.1
VIT_10s0071g00310.t01	Wine grape	cytosol	73.09	71.67
PGSC0003DMT400029999	Potato	cytosol	70.37	68.18
KRG90608	Soybean	cytosol	70.37	68.18
CDY45764	Canola	cytosol, peroxisome, plastid	98.02	68.1
Solyc04g008980.2.1	Tomato	cytosol	70.37	67.86
KRH36149	Soybean	cytosol	70.12	67.78
GSMUA_Achr8P13910_001	Banana	mitochondrion	51.11	58.47
GSMUA_Achr5P19410_001	Banana	cytosol	60.49	57.65
TraesCS6D01G216400.1	Wheat	cytosol	57.53	55.88
TraesCS6B01G262900.1	Wheat	cytosol	57.28	55.64
TraesCS6A01G234100.2	Wheat	cytosol	57.04	55.4
HORVU6Hr1G059950.1	Barley	cytosol	56.79	55.16
Os02t0636400-01	Rice	cytosol	26.91	54.5
Zm00001d051219_P001	Maize	cytosol	55.31	53.72
KXG30697	Sorghum	cytosol	53.58	51.42
CDY29091	Canola	plastid	21.23	49.71
KRH16153	Soybean	cytosol	30.12	49.19
CDY58589	Canola	extracellular	7.41	22.9
CDX88336	Canola	cytosol	18.27	22.84
CDY58588	Canola	extracellular	7.16	21.97
CDX68067	Canola	cytosol	19.26	21.73
CDX79184	Canola	cytosol	19.26	21.73
CDX87549	Canola	cytosol	19.01	21.69
CDY67973	Canola	plasma membrane	19.01	21.27
CDX96592	Canola	cytosol	19.01	21.27
CDY28039	Canola	cytosol	20.25	21.03
CDY35942	Canola	cytosol	20.49	21.01
CDX71945	Canola	cytosol	17.28	19.83
CDY06032	Canola	cytosol	17.04	19.55
CDY09760	Canola	cytosol	29.63	19.14
CDX90588	Canola	cytosol	29.38	18.92
CDY19741	Canola	cytosol	28.64	18.8
CDY53337	Canola	cytosol	28.64	18.15
CDX83114	Canola	cytosol	22.22	18.11
CDX88253	Canola	cytosol	28.15	17.81
CDY25663	Canola	plastid	22.47	17.7
CDX80608	Canola	cytosol	27.9	17.66
CDX68575	Canola	cytosol	22.22	17.61
CDY43846	Canola	plastid	22.22	17.51
CDX81326	Canola	cytosol	21.98	16.98
CDX87090	Canola	cytosol	25.68	16.88
CDY18646	Canola	cytosol	21.48	16.6
CDX80503	Canola	cytosol	25.43	16.59
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	27.65	16.57
CDY19807	Canola	cytosol	25.19	16.56
CDX88173	Canola	cytosol	25.19	16.4
CDY35358	Canola	cytosol	24.94	16.21
CDX80753	Canola	endoplasmic reticulum	26.67	15.98
CDX76980	Canola	cytosol	22.96	15.53
CDY12824	Canola	nucleus	22.72	8.44
CDY01426	Canola	cytosol	22.22	8.31

Protein Annotations

EnsemblPlants:CDX88014	EnsemblPlantsGene:GSBRNA2T00147419001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR45191
PFAM:PF13516	ProteinID:CDX88014	ProteinID:CDX88014.1	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0004EF3CAC
MapMan:35.1	:	:	:	:	:

Description

BnaA06g26050D

Coordinates

chrLK031854:+:116634..119555

Molecular Weight (calculated)

44031.4 Da

IEP (calculated)

6.598

GRAVY (calculated)

0.089

Length

405 amino acids

Sequence
(BLAST)

001: MASVCVNDAL TDDELRWILS RLDTDKDKEV FGLVCKRWLY LQSTDRKKLA ARAGPHMLGR LASRFTRIVE LDLSQSVSRS FYPGVTDSDL AVIAQGFKCL
101: RVLNLHTCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAQGCH DLRALHLAGC RFITDETLKS LSERCRDLEA LVLQGCTNIT DSGLADLVKG
201: CRKIKALDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGDESVSSL AQFCKNLETL IIGGCRDISD ESIVLLADSC RDGLKNLRMD WCLNVTDSSL
301: TCVLKQCKSL EALDIGCCEE VTDNAFRDLG SEDVLGLKVL KVSNCPKITV AGIGKLLEKC SSLEYLDVRS LPHVTEVRCS EAGLEFPACC KVNFSGSLTE
401: PDVLL

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.