Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87650 | Canola | cytosol | 96.89 | 96.89 |
| CDX68112 | Canola | cytosol | 88.2 | 94.04 |
| CDX85931 | Canola | cytosol | 88.2 | 94.04 |
| CDY39073 | Canola | cytosol | 93.17 | 93.75 |
| CDY13521 | Canola | cytosol | 92.55 | 93.12 |
| AT1G75950.1 | Thale cress | cytosol | 87.58 | 88.12 |
| CDY44209 | Canola | cytosol | 72.05 | 72.05 |
| CDY40610 | Canola | cytosol | 69.57 | 71.79 |
| CDX93698 | Canola | cytosol | 68.32 | 70.51 |
| CDY29370 | Canola | cytosol | 69.57 | 69.57 |
| CDY40611 | Canola | cytosol | 63.98 | 68.67 |
| CDX80590 | Canola | cytosol | 67.08 | 67.08 |
| CDX93699 | Canola | cytosol | 66.46 | 66.88 |
| CDY69121 | Canola | cytosol | 53.42 | 65.65 |
| CDX77280 | Canola | cytosol | 64.6 | 65.41 |
| CDY16470 | Canola | cytosol | 62.73 | 63.52 |
| CDX89042 | Canola | cytosol | 62.11 | 62.89 |
| CDY63159 | Canola | cytosol | 59.63 | 59.63 |
| CDY67544 | Canola | cytosol | 59.63 | 59.63 |
| CDY01389 | Canola | cytosol | 59.01 | 59.01 |
| CDY45767 | Canola | cytosol | 55.28 | 57.79 |
| CDY03015 | Canola | cytosol | 53.42 | 56.95 |
| CDY43408 | Canola | cytosol | 52.17 | 55.26 |
| CDY68971 | Canola | cytosol | 51.55 | 54.61 |
| CDY14922 | Canola | cytosol | 56.52 | 54.17 |
| CDY04140 | Canola | cytosol | 51.55 | 52.2 |
| CDY17409 | Canola | cytosol | 50.31 | 50.94 |
| CDX96963 | Canola | cytosol | 55.9 | 47.62 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078C8N4 | EnsemblPlants:CDX73212 | ProteinID:CDX73212 | ProteinID:CDX73212.1 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00103706001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EABA7B | SEG:seg |
Description
BnaC06g36600D
Coordinates
chrLK031797:+:2724011..2725306
Molecular Weight (calculated)
17918.9 Da
IEP (calculated)
4.203
GRAVY (calculated)
-0.450
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKKIVLKS SDNESFEVDE AVARESQTLA HMVEDDCTDN GIPLPNVTGK ILAKVIEYCK KHVDAAAAKT EAAADGGASS DDDLKAWDAE FMKIDQATLF
101: ELILAANYLN IKNLLDLTCQ TVADMIKGKT PDEIRTTFNI KNDFSPEEEE EVRRENQWAF E
101: ELILAANYLN IKNLLDLTCQ TVADMIKGKT PDEIRTTFNI KNDFSPEEEE EVRRENQWAF E
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Arabidopsis Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.