CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67566
CDX68112
CDX73212
CDX73567
CDX74991
CDX76219
CDX78161
CDX80590
CDX85931
CDX87650
CDX91331
CDY13306
CDY13521
CDY18463
CDY18464
CDY39073
CDY66761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	CDX68112	AT1G75950.1	12795696
AT3G59940.1	CDX73212	AT1G75950.1	12795696
AT3G59940.1	CDX80590	AT1G75950.1	12795696
AT3G59940.1	CDX85931	AT1G75950.1	12795696
AT3G59940.1	CDX87650	AT1G75950.1	12795696
AT3G59940.1	CDY13521	AT1G75950.1	12795696
AT3G59940.1	CDY39073	AT1G75950.1	12795696
AT3G59940.1	CDX68112	AT1G75950.1	21798944
AT3G59940.1	CDX73212	AT1G75950.1	21798944
AT3G59940.1	CDX80590	AT1G75950.1	21798944
AT3G59940.1	CDX85931	AT1G75950.1	21798944
AT3G59940.1	CDX87650	AT1G75950.1	21798944
AT3G59940.1	CDY13521	AT1G75950.1	21798944
AT3G59940.1	CDY39073	AT1G75950.1	21798944
AT3G59940.1	CDX74991	AT2G37040.1	21798944
AT3G59940.1	CDX91331	AT2G37040.1	21798944
AT3G59940.1	CDY18463	AT2G37040.1	21798944
AT3G59940.1	CDY18464	AT2G37040.1	21798944
AT3G59940.1	CDX67566	AT3G53260.1	21798944
AT3G59940.1	CDX73567	AT3G53260.1	21798944
AT3G59940.1	CDX76219	AT3G53260.1	21798944
AT3G59940.1	CDX78161	AT3G53260.1	21798944
AT3G59940.1	CDY13306	AT3G53260.1	21798944
AT3G59940.1	CDY66761	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71859	Canola	cytosol	88.5	88.06
Bra007494.1-P	Field mustard	nucleus	91.5	87.14
AT3G59940.1	Thale cress	cytosol	74.0	70.81
CDY17882	Canola	cytosol, mitochondrion, nucleus	57.25	59.79
CDX79780	Canola	cytosol	59.25	56.7
CDX95589	Canola	cytosol	55.25	56.67
CDX83439	Canola	cytosol	54.5	55.9
VIT_05s0094g01590.t01	Wine grape	cytosol	32.75	35.89
TraesCS4B01G087600.1	Wheat	cytosol	32.5	35.33
TraesCS4A01G228600.1	Wheat	cytosol	32.25	35.05
TraesCS4B01G087800.1	Wheat	cytosol	32.25	34.86
TraesCS4A01G228800.1	Wheat	cytosol	32.25	34.86
Zm00001d049016_P001	Maize	cytosol	32.25	34.68
TraesCS4D01G084900.1	Wheat	cytosol	32.0	34.59
HORVU4Hr1G014970.1	Barley	cytosol	31.75	34.42
Zm00001d007274_P001	Maize	cytosol	31.25	33.51
EES09544	Sorghum	cytosol	32.0	33.42
EES08254	Sorghum	cytosol	31.25	32.72
PGSC0003DMT400060940	Potato	cytosol	27.75	32.36
Os11t0246200-00	Rice	cytosol	30.75	32.11
TraesCS4D01G085000.1	Wheat	plastid	32.0	31.45
Solyc10g080610.1.1	Tomato	cytosol	27.0	31.4
KRH58914	Soybean	extracellular, plasma membrane	29.5	30.65
Zm00001d050815_P001	Maize	nucleus	28.5	30.56
OQU85159	Sorghum	cytosol	28.75	29.95
GSMUA_Achr6P06940_001	Banana	cytosol	27.0	29.19
Os02t0563000-00	Rice	cytosol	27.5	28.13
CDY58028	Canola	cytosol	24.75	27.65
CDY53309	Canola	cytosol	24.5	27.37
CDX87309	Canola	cytosol	24.5	27.3
CDY69686	Canola	cytosol	24.25	27.17
CDY36579	Canola	cytosol	24.25	27.09
CDY39979	Canola	cytosol	24.25	27.02
GSMUA_Achr6P28790_001	Banana	cytosol	9.75	23.64

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	UniProt:A0A078HU24	EnsemblPlants:CDY41196	ProteinID:CDY41196
ProteinID:CDY41196.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00072605001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF34	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0004EEF77B	SEG:seg	:	:	:

Description

BnaA09g38190DBnaA09g38190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU24]

Coordinates

chrLK032492:-:288875..290244

Molecular Weight (calculated)

44611.8 Da

IEP (calculated)

5.522

GRAVY (calculated)

-0.361

Length

400 amino acids

Sequence
(BLAST)

001: MSVSEEFNVR GDFRSRRDLI SGLPEELATE CLVRVPFEFH SSMKSVSRLW RSLVSDRSFD RERRRVGKDE SLLCLVQPEK KKEEEGESHS HQQQQPRVIG
101: TPLYGLSVYN ATLDTWHRVA IPERIPLFCE CVALQDAGKV LLIGGWDPET LQPVKDVFVL DFSAAGRRWK RGKPMSSARS FFACAAVGST KVYVAGGHDD
201: QKNAIKSAEV YDVEKDEWVT IPPMTEGRDE CHGFSMAADL GFCVLSGYGT ETQGQFRSDA EIYDPVSNSW SVIENVWPFP DLSPRGRTAA VAESAGDFRG
301: CKLWCFVDSQ RQCQPRWEVE DDSMKWRLVM ETIRLPVTTM TSVFAGSLSG QAVAMIGGGG EESGTMMMMT KGEKNGGKWS HVSTPTGFSS LPFSYSSIYV

Best Arabidopsis Sequence Match ( AT3G59940.1 )
(BLAST)

001: MGVSKKKSGE IRGDLIPGLP EELAIECLVR VPFQFHSSIK SVCRSWKCVI SSRSFIKERI GFGKAESLLC LVQPLTSPPS PAMMEGGEMS QKKKEEEEGE
101: SQMTQQLLQP RITGTPLYGL SVYNATLDTW HRVAIPERIP LFCECVAIQD AGKVLLIGGW DPETLQPVRD VFVLDFFAGE GSGRRFRRGR PMSAARSFFA
201: CASVGSTKVY VAGGHDDQKN ALRSAEVYDV EKDEWSMLPP MTEGRDECHG FSMATDPGFC VLSGYGTETQ GQFRSDGEIY DPITNSWSTI ENVWPFPDLS
301: PRGRTAAAAA EFPGDFRGCR LWCFIDSERQ SQPHWEVEDD SMKWKVIMDT IRLPVTTMTS VFAGSLSGQA VAMIGGGGEE SGTMMVKTTA EKNGGKWSHV
401: NTPSGFSSLP FSCSSIYV

Arabidopsis Description

SKIP20F-box/kelch-repeat protein SKIP20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.