Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007494.1-P | Field mustard | nucleus | 74.88 | 74.52 |
| CDY41196 | Canola | nucleus | 70.81 | 74.0 |
| CDX71859 | Canola | cytosol | 69.62 | 72.39 |
| AT2G44130.1 | Thale cress | cytosol | 54.31 | 55.5 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 32.54 | 37.26 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 30.86 | 35.05 |
| TraesCS4A01G228600.1 | Wheat | cytosol | 30.62 | 34.78 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 30.62 | 34.69 |
| Zm00001d049016_P001 | Maize | cytosol | 30.86 | 34.68 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 30.62 | 34.59 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 30.38 | 34.32 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 30.38 | 34.32 |
| Zm00001d007274_P001 | Maize | cytosol | 29.43 | 32.98 |
| EES09544 | Sorghum | cytosol | 30.14 | 32.9 |
| PGSC0003DMT400060940 | Potato | cytosol | 26.79 | 32.65 |
| Os11t0246200-00 | Rice | cytosol | 29.43 | 32.11 |
| Solyc10g080610.1.1 | Tomato | cytosol | 26.32 | 31.98 |
| EES08254 | Sorghum | cytosol | 29.19 | 31.94 |
| Zm00001d050815_P001 | Maize | nucleus | 28.23 | 31.64 |
| TraesCS4D01G085000.1 | Wheat | plastid | 30.62 | 31.45 |
| KRH58914 | Soybean | extracellular, plasma membrane | 27.99 | 30.39 |
| OQU85159 | Sorghum | cytosol | 27.75 | 30.21 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 26.55 | 30.0 |
| AT1G80440.1 | Thale cress | cytosol | 25.36 | 29.94 |
| AT1G15670.1 | Thale cress | cytosol | 24.4 | 28.41 |
| Os02t0563000-00 | Rice | cytosol | 26.08 | 27.88 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 8.61 | 21.82 |
Protein Annotations
| Gene3D:2.120.10.80 | EntrezGene:825164 | MapMan:9.2.1.1.2 | ProteinID:AEE79987.1 | ArrayExpress:AT3G59940 | EnsemblPlantsGene:AT3G59940 |
| RefSeq:AT3G59940 | TAIR:AT3G59940 | RefSeq:AT3G59940-TAIR-G | EnsemblPlants:AT3G59940.1 | TAIR:AT3G59940.1 | EMBL:AY074382 |
| EMBL:AY081325 | EMBL:AY088575 | EMBL:AY091240 | Unigene:At.1165 | ProteinID:CAB75813.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0019538 | GO:GO:0019748 | GO:GO:0080037 | GO:GO:2000762 | InterPro:IPR001810 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_191553.1 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020003 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | UniProt:Q9M1Y1 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 |
| SUPFAM:SSF81383 | UniParc:UPI000009F64B | SEG:seg | : | : | : |
Description
SKIP20F-box/kelch-repeat protein SKIP20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y1]
Coordinates
chr3:+:22142856..22144439
Molecular Weight (calculated)
45972.7 Da
IEP (calculated)
5.205
GRAVY (calculated)
-0.272
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSKKKSGE IRGDLIPGLP EELAIECLVR VPFQFHSSIK SVCRSWKCVI SSRSFIKERI GFGKAESLLC LVQPLTSPPS PAMMEGGEMS QKKKEEEEGE
101: SQMTQQLLQP RITGTPLYGL SVYNATLDTW HRVAIPERIP LFCECVAIQD AGKVLLIGGW DPETLQPVRD VFVLDFFAGE GSGRRFRRGR PMSAARSFFA
201: CASVGSTKVY VAGGHDDQKN ALRSAEVYDV EKDEWSMLPP MTEGRDECHG FSMATDPGFC VLSGYGTETQ GQFRSDGEIY DPITNSWSTI ENVWPFPDLS
301: PRGRTAAAAA EFPGDFRGCR LWCFIDSERQ SQPHWEVEDD SMKWKVIMDT IRLPVTTMTS VFAGSLSGQA VAMIGGGGEE SGTMMVKTTA EKNGGKWSHV
401: NTPSGFSSLP FSCSSIYV
101: SQMTQQLLQP RITGTPLYGL SVYNATLDTW HRVAIPERIP LFCECVAIQD AGKVLLIGGW DPETLQPVRD VFVLDFFAGE GSGRRFRRGR PMSAARSFFA
201: CASVGSTKVY VAGGHDDQKN ALRSAEVYDV EKDEWSMLPP MTEGRDECHG FSMATDPGFC VLSGYGTETQ GQFRSDGEIY DPITNSWSTI ENVWPFPDLS
301: PRGRTAAAAA EFPGDFRGCR LWCFIDSERQ SQPHWEVEDD SMKWKVIMDT IRLPVTTMTS VFAGSLSGQA VAMIGGGGEE SGTMMVKTTA EKNGGKWSHV
401: NTPSGFSSLP FSCSSIYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.