Factsheet for VIT_05s0094g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT3G59940.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT3G59940.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT3G59940.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT3G59940.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT3G59940.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT3G59940.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT3G59940.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944
AT3G59940.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08870.t01	Wine grape	cytosol	11.78	37.72
CDY17882	Canola	cytosol, mitochondrion, nucleus	35.34	33.68
CDX83439	Canola	cytosol	35.62	33.33
CDX95589	Canola	cytosol	35.07	32.82
CDY41196	Canola	nucleus	35.89	32.75
CDX71859	Canola	cytosol	35.89	32.59
AT3G59940.1	Thale cress	cytosol	37.26	32.54
CDX79780	Canola	cytosol	36.99	32.3
Bra000342.1-P	Field mustard	cytosol	35.34	32.17
Bra004807.1-P	Field mustard	cytosol	37.53	31.93
Bra007494.1-P	Field mustard	nucleus	35.89	31.19
AT2G44130.1	Thale cress	cytosol	34.79	31.05
GSMUA_Achr6P28790_001	Banana	cytosol	13.97	30.91
VIT_08s0007g07120.t01	Wine grape	cytosol	28.22	30.03
HORVU4Hr1G014970.1	Barley	cytosol	29.86	29.54
TraesCS4A01G228800.1	Wheat	cytosol	29.86	29.46
TraesCS4B01G087800.1	Wheat	cytosol	29.86	29.46
TraesCS4D01G084900.1	Wheat	cytosol	29.86	29.46
TraesCS4A01G228600.1	Wheat	cytosol	29.59	29.35
TraesCS4B01G087600.1	Wheat	cytosol	29.59	29.35
Zm00001d049016_P001	Maize	cytosol	29.86	29.3
Zm00001d007274_P001	Maize	cytosol	29.04	28.42
EES08254	Sorghum	cytosol	28.77	27.49
EES09544	Sorghum	cytosol	28.77	27.42
Os11t0246200-00	Rice	cytosol	28.49	27.15
TraesCS4D01G085000.1	Wheat	plastid	29.59	26.54
VIT_09s0002g05080.t01	Wine grape	cytosol	25.21	25.92
VIT_09s0002g08860.t01	Wine grape	cytosol	24.11	25.29
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	21.1	25.25
Zm00001d050815_P001	Maize	nucleus	25.75	25.2
VIT_09s0002g04930.t01	Wine grape	cytosol	10.41	24.68
GSMUA_Achr6P06940_001	Banana	cytosol	24.93	24.59
VIT_09s0002g08880.t01	Wine grape	cytosol	20.55	24.35
VIT_09s0002g05210.t01	Wine grape	cytosol	8.77	23.88
OQU85159	Sorghum	cytosol	24.93	23.7
Os02t0563000-00	Rice	cytosol	24.11	22.51

Protein Annotations

ArrayExpress:VIT_05s0094g01590	EMBL:FN595507	EnsemblPlants:VIT_05s0094g01590.t01	EnsemblPlantsGene:VIT_05s0094g01590	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414
PANTHER:PTHR24414:SF34	PFAM:PF01344	ProteinID:CBI24773	ProteinID:CBI24773.3	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	UniParc:UPI0001BE2800	UniProt:D7T2P2	MapMan:9.2.1.1.2	:	:

Description

No Description!

Coordinates

chr5:+:24864593..24868257

Molecular Weight (calculated)

40693.4 Da

IEP (calculated)

5.961

GRAVY (calculated)

-0.554

Length

365 amino acids

Sequence
(BLAST)

001: MLNLHFTQFP PQTKTQPFEG CQYNHPSAPP YQYGLSIFNA TYQTWHQMMP SSIPMFCHCV ALPSSGKLLL LGGWDPTTLD PVPDVYVLNL IGEDGARWRR
101: AAPMSVARSF FACAVVGRST VYVAGGHDSH KNALRSAEVY DAEADEWRTL PSMWEERDES QGLSWEGDSR FWVVSGYSTE NQGRFRSDAE CYDPETGCWS
201: KVEGLWPFPS SSPRGCVSVN SASGRGQSKH QWWRIAGEEQ QQQQTGIGEI REYEREAERW RVLSSIPLPH PEFGLGRSSK CLVSLDGGGD GNSRRMLVMS
301: SGGEGKAGAF ILERNDKGKT KWNHIHVPPQ FTGFPYGDYF SITVAGYPEA HPNVIERDGV ANLEG

Best Arabidopsis Sequence Match ( AT3G59940.1 )
(BLAST)

001: MGVSKKKSGE IRGDLIPGLP EELAIECLVR VPFQFHSSIK SVCRSWKCVI SSRSFIKERI GFGKAESLLC LVQPLTSPPS PAMMEGGEMS QKKKEEEEGE
101: SQMTQQLLQP RITGTPLYGL SVYNATLDTW HRVAIPERIP LFCECVAIQD AGKVLLIGGW DPETLQPVRD VFVLDFFAGE GSGRRFRRGR PMSAARSFFA
201: CASVGSTKVY VAGGHDDQKN ALRSAEVYDV EKDEWSMLPP MTEGRDECHG FSMATDPGFC VLSGYGTETQ GQFRSDGEIY DPITNSWSTI ENVWPFPDLS
301: PRGRTAAAAA EFPGDFRGCR LWCFIDSERQ SQPHWEVEDD SMKWKVIMDT IRLPVTTMTS VFAGSLSGQA VAMIGGGGEE SGTMMVKTTA EKNGGKWSHV
401: NTPSGFSSLP FSCSSIYV

Arabidopsis Description

SKIP20F-box/kelch-repeat protein SKIP20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.