CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004807.1-P	Field mustard	cytosol	93.78	91.38
CDY17882	Canola	cytosol, mitochondrion, nucleus	79.43	86.68
CDX95589	Canola	cytosol	60.53	64.87
CDX83439	Canola	cytosol	60.29	64.62
CDX71859	Canola	cytosol	58.13	60.45
AT2G44130.1	Thale cress	cytosol	59.09	60.39
CDY41196	Canola	nucleus	56.7	59.25
VIT_05s0094g01590.t01	Wine grape	cytosol	32.3	36.99
Zm00001d007274_P001	Maize	cytosol	31.58	35.39
TraesCS4A01G228600.1	Wheat	cytosol	30.86	35.05
Zm00001d049016_P001	Maize	cytosol	31.1	34.95
TraesCS4B01G087600.1	Wheat	cytosol	30.62	34.78
TraesCS4B01G087800.1	Wheat	cytosol	29.9	33.78
TraesCS4A01G228800.1	Wheat	cytosol	29.9	33.78
Solyc10g080610.1.1	Tomato	cytosol	27.75	33.72
HORVU4Hr1G014970.1	Barley	cytosol	29.67	33.6
PGSC0003DMT400060940	Potato	cytosol	27.51	33.53
TraesCS4D01G084900.1	Wheat	cytosol	29.67	33.51
EES09544	Sorghum	cytosol	30.38	33.16
EES08254	Sorghum	cytosol	29.9	32.72
KRH58914	Soybean	extracellular, plasma membrane	29.43	31.95
GSMUA_Achr6P06940_001	Banana	cytosol	28.23	31.89
Os11t0246200-00	Rice	cytosol	29.19	31.85
TraesCS4D01G085000.1	Wheat	plastid	30.86	31.7
Zm00001d050815_P001	Maize	nucleus	27.27	30.56
OQU85159	Sorghum	cytosol	26.79	29.17
CDY58028	Canola	cytosol	24.16	28.21
CDY36579	Canola	cytosol	24.16	28.21
CDY39979	Canola	cytosol	24.16	28.13
CDX87309	Canola	cytosol	24.16	28.13
Os02t0563000-00	Rice	cytosol	26.08	27.88
CDY69686	Canola	cytosol	23.45	27.45
CDY53309	Canola	cytosol	22.97	26.82
GSMUA_Achr6P28790_001	Banana	cytosol	10.53	26.67

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EnsemblPlants:CDX79780	ProteinID:CDX79780	ProteinID:CDX79780.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00132608001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF34
SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF2B27	SEG:seg

Description

BnaA05g03760D

Coordinates

chrLK031819:-:139012..140356

Molecular Weight (calculated)

46046.4 Da

IEP (calculated)

5.252

GRAVY (calculated)

-0.400

Length

418 amino acids

Sequence
(BLAST)

001: MSKKRAGDVS KGIHKCHGLI PGLPSELAIE CLVRVPYQFQ SDMKSVSRSW RSLLSDSSFT KERQRCGKAE LLLCLVQPLT PPNPASKAVG ETLLGEKEVE
101: DESPRVSGTP RFGLSVYNAT MSTWNRVAFP GQQIPLFCEC VAVQASGKIL LIGGWDPETL QPVKDVYVLE LAGEGSGRRW RKGASMNEAR SFFACATVGS
201: TKVYVAGGHD DQKNALRSAE VYDVEKDEWL MLPPMTEGRD ESHLNFDKDG PLSAHLCDGY TVGKELRFCV LSGYGTESQG RFRSDGEVYD PVTNSWSRIE
301: NVWPFPDASP RGRVAGDIRG PSSKLWCFTD SKREWETEDE SGKWRLDLES IELPVVTGSS VYGGSLGGEA VVMSGGGSES EGRGVMMMRK TEEEKWSRVD
401: EIPFGFSILP FSHASIYV

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.