Factsheet for HORVU4Hr1G014970.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G016330.1
HORVU1Hr1G022060.1
HORVU2Hr1G038120.1
HORVU2Hr1G038140.1
HORVU2Hr1G062750.1
HORVU2Hr1G089440.9
HORVU2Hr1G089540.1
HORVU3Hr1G005330.2
HORVU6Hr1G058820.2
HORVU6Hr1G058840.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	HORVU0Hr1G016330.1	AT2G37040.1	21798944
AT3G59940.1	HORVU1Hr1G022060.1	AT2G37040.1	21798944
AT3G59940.1	HORVU2Hr1G038120.1	AT2G37040.1	21798944
AT3G59940.1	HORVU2Hr1G038140.1	AT2G37040.1	21798944
AT3G59940.1	HORVU2Hr1G062750.1	AT2G37040.1	21798944
AT3G59940.1	HORVU2Hr1G089440.9	AT2G37040.1	21798944
AT3G59940.1	HORVU2Hr1G089540.1	AT2G37040.1	21798944
AT3G59940.1	HORVU3Hr1G005330.2	AT2G37040.1	21798944
AT3G59940.1	HORVU6Hr1G058820.2	AT2G37040.1	21798944
AT3G59940.1	HORVU6Hr1G058840.1	AT2G37040.1	21798944
AT3G59940.1	HORVU0Hr1G016330.1	AT3G53260.1	21798944
AT3G59940.1	HORVU1Hr1G022060.1	AT3G53260.1	21798944
AT3G59940.1	HORVU2Hr1G038120.1	AT3G53260.1	21798944
AT3G59940.1	HORVU2Hr1G038140.1	AT3G53260.1	21798944
AT3G59940.1	HORVU2Hr1G062750.1	AT3G53260.1	21798944
AT3G59940.1	HORVU2Hr1G089440.9	AT3G53260.1	21798944
AT3G59940.1	HORVU2Hr1G089540.1	AT3G53260.1	21798944
AT3G59940.1	HORVU3Hr1G005330.2	AT3G53260.1	21798944
AT3G59940.1	HORVU6Hr1G058820.2	AT3G53260.1	21798944
AT3G59940.1	HORVU6Hr1G058840.1	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G084900.1	Wheat	cytosol	98.37	98.11
TraesCS4B01G087800.1	Wheat	cytosol	97.83	97.57
TraesCS4A01G228800.1	Wheat	cytosol	97.83	97.57
Os11t0246200-00	Rice	cytosol	82.66	79.63
Zm00001d049016_P001	Maize	cytosol	80.22	79.57
EES09544	Sorghum	cytosol	81.3	78.33
EES08254	Sorghum	cytosol	80.49	77.75
Zm00001d007274_P001	Maize	cytosol	78.05	77.21
GSMUA_Achr6P06940_001	Banana	cytosol	39.02	38.92
GSMUA_Achr6P28790_001	Banana	cytosol	16.26	36.36
PGSC0003DMT400060940	Potato	cytosol	29.81	32.07
CDX83439	Canola	cytosol	33.88	32.05
CDX95589	Canola	cytosol	33.6	31.79
CDY41196	Canola	nucleus	34.42	31.75
Bra000342.1-P	Field mustard	cytosol	34.15	31.42
Solyc10g080610.1.1	Tomato	cytosol	29.27	31.4
KRH58914	Soybean	extracellular, plasma membrane	32.52	31.17
CDX71859	Canola	cytosol	33.88	31.09
Bra007494.1-P	Field mustard	nucleus	34.96	30.71
AT3G59940.1	Thale cress	cytosol	34.69	30.62
CDY17882	Canola	cytosol, mitochondrion, nucleus	31.44	30.29
VIT_05s0094g01590.t01	Wine grape	cytosol	29.54	29.86
CDX79780	Canola	cytosol	33.6	29.67
Bra004807.1-P	Field mustard	cytosol	34.15	29.37
AT2G44130.1	Thale cress	cytosol	32.52	29.34

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	UniProt:A0A287NC68	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU4Hr1G014970	EnsemblPlants:HORVU4Hr1G014970.1	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF34
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000B4745CC	SEG:seg	:

Description

No Description!

Coordinates

chrchr4H:-:56189742..56191675

Molecular Weight (calculated)

39566.7 Da

IEP (calculated)

7.468

GRAVY (calculated)

-0.256

Length

369 amino acids

Sequence
(BLAST)

001: MRNQKSRVQE RKVEHIDLIP GMPDDVAVDC LARVPHASFR SMRGVCRGWN TAAAAPDFAL ARAEAGANED LVYLLQFGNP AAAADDAAPG NAQAYGVSVY
101: NVTTGEWRRE GAAPPVPMFA QCAAVGSRLA VLGGWDPKTF EPVADVHVLD ASTGVWRRGA PMRSARSFFA CAEAGGKIYV AGGHDKLKNA LKTAEAYDAG
201: ADAWDPLPDM SEERDECDGM ATVAGDRFLA VSGYRTGRQG GFERDAEWFD PAAREWRRLE RVRAPPSAAH VVVRGRVWCI EGTAVMEYRG ERRSWREVGP
301: SPPGLKAGTA RAVAVGGGER VVVTGAIESE GGGAGHALWV FDVKSKNWTV VRPPPQFAGF VFSIGSVRV

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.